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Somatic mutant selection is altered by prior NOTCH1 mutation in ageing esophageal epithelium

Authors: Charlotte King1, Emilie Abbie1, Joanna C. Fowler1, Irina Abnizova1, Roshan K. Sood1, Swee Hoe Ong1, Michael W. J. Hall1,2, Faye Lynch-Williams3, Benjamin A. Hall4, Philip H. Jones1,2,5 Abstract: In cancer evolution, genome alterations often occur in a specific order, implying selection depends on the prior clonal genotype 1-3. It is unknown if similar constraints operate in normal epithelia. Here, we mapped mutations in normal mid-esophagus of aged UK subjects. Mutant NOTCH1 clones colonized most of the epithelium by age 60 and above 70 tissue was saturated with mutants under strong competitive selection. Mutant TP53 was more strongly selected in donors over 60 years of age. Samples predominantly mutant for NOTCH1 showed increased selection of NOTCH2 mutants and weaker selection of mutant TP53 compared with samples that were mostly NOTCH1 wild type. In mouse esophagus lacking Notch1 we observed strong selection of mutant Notch2 and other genes not selected in wild type esophagus. In normal ageing esophagus, the first driver mutation may change the trajectory of subsequent somatic evolution by altering mutant selection.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002416 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008373950 cram 7.6 GB
EGAF00008373951 cram 7.1 GB
EGAF00008373952 cram 6.7 GB
EGAF00008373953 cram 6.4 GB
EGAF00008373954 cram 7.0 GB
EGAF00008373955 cram 7.9 GB
EGAF00008373956 cram 7.4 GB
EGAF00008373957 cram 7.0 GB
EGAF00008373958 cram 6.7 GB
EGAF00008373959 cram 7.3 GB
EGAF00008373960 cram 7.7 GB
EGAF00008373961 cram 7.2 GB
EGAF00008373962 cram 6.9 GB
EGAF00008373963 cram 6.6 GB
EGAF00008373964 cram 7.2 GB
EGAF00008373965 cram 7.6 GB
EGAF00008373966 cram 7.1 GB
EGAF00008373967 cram 6.7 GB
EGAF00008373968 cram 6.5 GB
EGAF00008373969 cram 7.0 GB
EGAF00008373970 cram 7.4 GB
EGAF00008373971 cram 6.9 GB
EGAF00008373972 cram 6.6 GB
EGAF00008373973 cram 6.3 GB
EGAF00008373974 cram 6.9 GB
EGAF00008373975 cram 7.5 GB
EGAF00008373976 cram 7.0 GB
EGAF00008373977 cram 6.7 GB
EGAF00008373978 cram 6.4 GB
EGAF00008373979 cram 7.0 GB
EGAF00008373980 cram 5.6 GB
EGAF00008373981 cram 5.1 GB
EGAF00008373982 cram 5.8 GB
EGAF00008373983 cram 5.4 GB
EGAF00008373984 cram 5.5 GB
EGAF00008373985 cram 5.0 GB
EGAF00008373986 cram 5.7 GB
EGAF00008373987 cram 5.3 GB
EGAF00008373988 cram 6.0 GB
EGAF00008373989 cram 5.6 GB
EGAF00008373990 cram 5.6 GB
EGAF00008373991 cram 5.2 GB
EGAF00008373992 cram 5.5 GB
EGAF00008373993 cram 5.1 GB
EGAF00008373994 cram 5.7 GB
EGAF00008373995 cram 5.4 GB
EGAF00008373996 cram 5.4 GB
EGAF00008373997 cram 5.0 GB
EGAF00008373998 cram 5.5 GB
EGAF00008373999 cram 5.1 GB
EGAF00008374000 cram 5.7 GB
EGAF00008374001 cram 5.3 GB
EGAF00008374002 cram 5.4 GB
EGAF00008374003 cram 4.9 GB
EGAF00008374004 cram 5.6 GB
EGAF00008374005 cram 5.2 GB
EGAF00008374006 cram 5.8 GB
EGAF00008374007 cram 5.4 GB
EGAF00008374008 cram 5.5 GB
EGAF00008374009 cram 5.1 GB
EGAF00008374010 cram 5.6 GB
EGAF00008374011 cram 5.2 GB
EGAF00008374012 cram 5.8 GB
EGAF00008374013 cram 5.4 GB
EGAF00008374014 cram 5.5 GB
EGAF00008374015 cram 5.0 GB
EGAF00008374016 cram 5.7 GB
EGAF00008374017 cram 5.2 GB
EGAF00008374018 cram 5.9 GB
EGAF00008374019 cram 5.5 GB
EGAF00008374020 cram 5.6 GB
EGAF00008374021 cram 5.1 GB
EGAF00008374022 cram 5.6 GB
EGAF00008374023 cram 5.2 GB
EGAF00008374024 cram 5.8 GB
EGAF00008374025 cram 5.5 GB
EGAF00008374026 cram 5.5 GB
EGAF00008374027 cram 5.1 GB
EGAF00008374028 cram 5.7 GB
EGAF00008374029 cram 5.0 GB
EGAF00008374030 cram 5.4 GB
EGAF00008374031 cram 4.9 GB
EGAF00008374032 cram 4.8 GB
EGAF00008374033 cram 5.0 GB
EGAF00008374034 cram 5.8 GB
EGAF00008374035 cram 5.2 GB
EGAF00008374036 cram 5.5 GB
EGAF00008374037 cram 5.0 GB
EGAF00008374038 cram 4.9 GB
EGAF00008374039 cram 5.2 GB
EGAF00008374040 cram 5.7 GB
EGAF00008374041 cram 5.1 GB
EGAF00008374042 cram 5.4 GB
EGAF00008374043 cram 4.9 GB
EGAF00008374044 cram 4.9 GB
EGAF00008374045 cram 5.1 GB
EGAF00008374046 cram 5.7 GB
EGAF00008374047 cram 5.0 GB
EGAF00008374048 cram 5.4 GB
EGAF00008374049 cram 4.9 GB
EGAF00008374050 cram 4.8 GB
EGAF00008374051 cram 5.1 GB
EGAF00008374052 cram 5.7 GB
EGAF00008374053 cram 5.1 GB
EGAF00008374054 cram 5.4 GB
EGAF00008374055 cram 4.9 GB
EGAF00008374056 cram 4.9 GB
EGAF00008374057 cram 5.1 GB
EGAF00008374058 cram 5.8 GB
EGAF00008374059 cram 5.1 GB
EGAF00008374060 cram 5.5 GB
EGAF00008374061 cram 5.0 GB
EGAF00008374062 cram 4.9 GB
EGAF00008374063 cram 5.1 GB
EGAF00008374064 cram 7.1 GB
EGAF00008374065 cram 6.5 GB
EGAF00008374066 cram 6.3 GB
EGAF00008374067 cram 6.0 GB
EGAF00008374068 cram 6.5 GB
EGAF00008374069 cram 7.0 GB
EGAF00008374070 cram 6.4 GB
EGAF00008374071 cram 6.2 GB
EGAF00008374072 cram 5.9 GB
EGAF00008374073 cram 6.4 GB
EGAF00008374074 cram 6.1 GB
EGAF00008374075 cram 5.5 GB
EGAF00008374076 cram 5.8 GB
EGAF00008374077 cram 5.3 GB
EGAF00008374078 cram 5.3 GB
EGAF00008374079 cram 5.5 GB
EGAF00008374080 cram 6.1 GB
EGAF00008374081 cram 5.4 GB
EGAF00008374082 cram 5.8 GB
EGAF00008374083 cram 5.3 GB
EGAF00008374084 cram 5.2 GB
EGAF00008374085 cram 5.5 GB
EGAF00008374086 cram 5.2 GB
EGAF00008374087 cram 5.6 GB
EGAF00008374088 cram 5.4 GB
EGAF00008374089 cram 5.4 GB
EGAF00008374090 cram 5.6 GB
EGAF00008374091 cram 6.0 GB
EGAF00008374092 cram 5.1 GB
EGAF00008374093 cram 5.6 GB
EGAF00008374094 cram 5.4 GB
EGAF00008374095 cram 5.4 GB
EGAF00008374096 cram 5.6 GB
EGAF00008374097 cram 6.0 GB
EGAF00008374098 cram 5.1 GB
EGAF00008374099 cram 5.6 GB
EGAF00008374100 cram 5.3 GB
EGAF00008374101 cram 5.4 GB
EGAF00008374102 cram 5.6 GB
EGAF00008374103 cram 6.0 GB
EGAF00008374104 cram 5.1 GB
EGAF00008374105 cram 5.6 GB
EGAF00008374106 cram 5.4 GB
EGAF00008374107 cram 5.4 GB
EGAF00008374108 cram 5.6 GB
EGAF00008374109 cram 6.0 GB
EGAF00008374110 cram 5.2 GB
EGAF00008374111 cram 5.6 GB
EGAF00008374112 cram 5.4 GB
EGAF00008374113 cram 5.4 GB
EGAF00008374114 cram 5.6 GB
EGAF00008374115 cram 6.0 GB
EGAF00008374116 cram 5.2 GB
EGAF00008374117 cram 5.5 GB
EGAF00008374118 cram 5.4 GB
EGAF00008374119 cram 5.3 GB
EGAF00008374120 cram 5.6 GB
EGAF00008374121 cram 6.0 GB
EGAF00008374122 cram 5.2 GB
EGAF00008374123 cram 5.6 GB
EGAF00008374124 cram 5.4 GB
EGAF00008374125 cram 5.3 GB
EGAF00008374126 cram 5.6 GB
EGAF00008374127 cram 5.9 GB
EGAF00008374128 cram 5.0 GB
EGAF00008374129 cram 5.4 GB
EGAF00008374130 cram 5.2 GB
EGAF00008374131 cram 5.1 GB
EGAF00008374132 cram 5.4 GB
EGAF00008374133 cram 5.8 GB
184 Files (1.1 TB)