GBM-Space: Spatial Transcriptomic Profiling of Glioblastoma (10x Genomics - Visium)
Cancer cells display heterogeneous and dynamic states in glioblastoma, but how these malignant states arise and whether they follow a tractable cellular trajectory across tumours is poorly understood. Here, we generate a deep single cell and spatial multi-region atlas of 12 isocitrate dehydrogenase wild-type (IDH-wt) primary glioblastomas that integrates transcriptomic, epigenomic and genomic analysis to comprehensively characterise their tumour heterogeneity. The datasets in this study include sequencing data from Visium spatial transcriptomic (10x Genomics) profiling of these tumours.
- 15/04/2025
- 1 sample
- DAC: EGAC00001000205
- Technology: Illumina NovaSeq 6000
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005801 | Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00008709585 | cram | 16.7 GB |
|
|
| EGAF00008709586 | cram | 13.0 GB |
|
|
| EGAF00008709587 | cram | 20.3 GB |
|
|
| EGAF00008709588 | cram | 14.3 GB |
|
|
| EGAF00008709589 | cram | 13.3 GB |
|
|
| EGAF00008709590 | cram | 14.0 GB |
|
|
| EGAF00008709591 | cram | 15.4 GB |
|
|
| EGAF00008709592 | cram | 14.1 GB |
|
|
| EGAF00008710361 | cram | 9.4 GB |
|
|
| EGAF00008710362 | cram | 10.7 GB |
|
|
| EGAF00008710363 | cram | 17.4 GB |
|
|
| EGAF00008710364 | cram | 20.3 GB |
|
|
| EGAF00008710365 | cram | 13.4 GB |
|
|
| EGAF00008710366 | cram | 13.5 GB |
|
|
| EGAF00008710367 | cram | 19.1 GB |
|
|
| EGAF00008710368 | cram | 17.2 GB |
|
|
| EGAF00008711179 | cram | 7.1 GB |
|
|
| EGAF00008711180 | cram | 8.7 GB |
|
|
| EGAF00008711183 | cram | 6.9 GB |
|
|
| EGAF00008711184 | cram | 10.4 GB |
|
|
| EGAF00008711185 | cram | 7.6 GB |
|
|
| EGAF00008711186 | cram | 4.9 GB |
|
|
| EGAF00008711187 | cram | 3.0 GB |
|
|
| EGAF00008711188 | cram | 7.2 GB |
|
|
| EGAF00008711189 | cram | 13.6 GB |
|
|
| EGAF00008711190 | cram | 7.5 GB |
|
|
| EGAF00008711191 | cram | 10.0 GB |
|
|
| EGAF00008711192 | cram | 9.4 GB |
|
|
| EGAF00008711193 | cram | 13.3 GB |
|
|
| EGAF00008711194 | cram | 9.5 GB |
|
|
| EGAF00008711195 | cram | 10.5 GB |
|
|
| EGAF00008711196 | cram | 13.6 GB |
|
|
| EGAF00008711197 | cram | 10.1 GB |
|
|
| EGAF00008711198 | cram | 9.6 GB |
|
|
| EGAF00008711199 | cram | 9.7 GB |
|
|
| EGAF00008711200 | cram | 12.6 GB |
|
|
| EGAF00008711201 | cram | 9.9 GB |
|
|
| EGAF00008711202 | cram | 8.4 GB |
|
|
| EGAF00008711203 | cram | 10.6 GB |
|
|
| EGAF00008711204 | cram | 8.8 GB |
|
|
| EGAF00008711206 | cram | 9.9 GB |
|
|
| EGAF00008711208 | cram | 7.2 GB |
|
|
| EGAF00008711209 | cram | 8.5 GB |
|
|
| EGAF00008711210 | cram | 11.8 GB |
|
|
| EGAF00008711211 | cram | 9.1 GB |
|
|
| EGAF00008711212 | cram | 7.1 GB |
|
|
| EGAF00008711215 | cram | 11.6 GB |
|
|
| EGAF00008711216 | cram | 12.2 GB |
|
|
| EGAF00008711217 | cram | 9.6 GB |
|
|
| EGAF00008711218 | cram | 10.9 GB |
|
|
| EGAF00008711219 | cram | 10.4 GB |
|
|
| EGAF00008711220 | cram | 10.6 GB |
|
|
| EGAF00008711221 | cram | 7.6 GB |
|
|
| EGAF00008711222 | cram | 4.2 GB |
|
|
| EGAF00008711223 | cram | 1.1 GB |
|
|
| EGAF00008711226 | cram | 7.2 GB |
|
|
| EGAF00008711595 | cram | 2.8 GB |
|
|
| EGAF00008711596 | cram | 5.8 GB |
|
|
| EGAF00008711597 | cram | 5.8 GB |
|
|
| EGAF00008711598 | cram | 5.6 GB |
|
|
| EGAF00008711599 | cram | 8.5 GB |
|
|
| EGAF00008711600 | cram | 6.0 GB |
|
|
| EGAF00008711601 | cram | 6.0 GB |
|
|
| EGAF00008711602 | cram | 7.3 GB |
|
|
| EGAF00008711603 | cram | 2.8 GB |
|
|
| EGAF00008711604 | cram | 5.6 GB |
|
|
| EGAF00008711605 | cram | 7.0 GB |
|
|
| EGAF00008711606 | cram | 5.5 GB |
|
|
| EGAF00008711607 | cram | 5.3 GB |
|
|
| EGAF00008711608 | cram | 5.4 GB |
|
|
| EGAF00008711609 | cram | 4.9 GB |
|
|
| EGAF00008711610 | cram | 5.6 GB |
|
|
| EGAF00008711611 | cram | 6.1 GB |
|
|
| EGAF00008711612 | cram | 9.1 GB |
|
|
| EGAF00008711613 | cram | 5.6 GB |
|
|
| EGAF00008711614 | cram | 5.7 GB |
|
|
| EGAF00008711615 | cram | 2.7 GB |
|
|
| EGAF00008711616 | cram | 5.7 GB |
|
|
| EGAF00008711617 | cram | 5.6 GB |
|
|
| EGAF00008711618 | cram | 5.6 GB |
|
|
| EGAF00008711619 | cram | 8.3 GB |
|
|
| EGAF00008711620 | cram | 5.9 GB |
|
|
| EGAF00008711621 | cram | 5.9 GB |
|
|
| EGAF00008711622 | cram | 7.2 GB |
|
|
| EGAF00008711623 | cram | 2.8 GB |
|
|
| EGAF00008711624 | cram | 5.5 GB |
|
|
| EGAF00008711625 | cram | 6.9 GB |
|
|
| EGAF00008711626 | cram | 5.4 GB |
|
|
| EGAF00008711627 | cram | 5.3 GB |
|
|
| EGAF00008711628 | cram | 5.4 GB |
|
|
| EGAF00008711629 | cram | 4.8 GB |
|
|
| EGAF00008711630 | cram | 5.5 GB |
|
|
| EGAF00008711631 | cram | 6.0 GB |
|
|
| EGAF00008711632 | cram | 8.8 GB |
|
|
| EGAF00008711633 | cram | 5.6 GB |
|
|
| EGAF00008711634 | cram | 5.6 GB |
|
|
| EGAF00008711683 | cram | 8.1 GB |
|
|
| EGAF00008711684 | cram | 9.5 GB |
|
|
| EGAF00008711685 | cram | 9.6 GB |
|
|
| EGAF00008711686 | cram | 10.8 GB |
|
|
| EGAF00008711979 | cram | 10.8 GB |
|
|
| EGAF00008711980 | cram | 7.9 GB |
|
|
| EGAF00008711981 | cram | 9.1 GB |
|
|
| EGAF00008711982 | cram | 9.6 GB |
|
|
| EGAF00008711983 | cram | 11.6 GB |
|
|
| EGAF00008711984 | cram | 9.8 GB |
|
|
| EGAF00008711986 | cram | 18.7 GB |
|
|
| EGAF00008711995 | cram | 41.2 GB |
|
|
| EGAF00008711996 | cram | 36.4 GB |
|
|
| EGAF00008712000 | cram | 13.7 GB |
|
|
| EGAF00008712002 | cram | 22.7 GB |
|
|
| EGAF00008712003 | cram | 23.6 GB |
|
|
| EGAF00008712004 | cram | 17.1 GB |
|
|
| EGAF00008712005 | cram | 15.0 GB |
|
|
| EGAF00008712006 | cram | 21.6 GB |
|
|
| EGAF00008712008 | cram | 13.6 GB |
|
|
| EGAF00008712010 | cram | 22.4 GB |
|
|
| EGAF00008712011 | cram | 23.4 GB |
|
|
| EGAF00008712012 | cram | 17.1 GB |
|
|
| EGAF00008712013 | cram | 14.9 GB |
|
|
| EGAF00008712014 | cram | 21.4 GB |
|
|
| 121 Files (1.3 TB) | ||||