Single-cell RNA sequencing of human kidney transplant nephrectomies with chronic rejection or non-alloimmune graft injury
This dataset contains raw single-cell RNA sequencing (scRNA-seq) data for five new kidney allograft nephrectomy samples used to construct the described in the following study: https://www.biorxiv.org/content/10.1101/2022.10.28.514222v2.full. The full description of processing is described in the manuscript. Briefly, samples were digested into a single cell suspension and run according to the 10X Genomics Chromium 5’ single cell kit (v2). Sequencing was performed using an Illumina Novaseq instrument. Samples were designated as TXN2 (EGAN00002519570, mycotic pseudoaneurysm, control dataset), TXN3 (EGAN00002235628, renal vein thrombus, control dataset), TXN5 (EGAN00002519573, chronic transplant rejection), TXN6 (EGAN00002519572, chronic pyelonephritis and renal artery stenosis, non-alloimmune graft injury dataset), TXN7 (EGAN00002519576, recurrent focal segmental glomerulosclerosis, non-alloimmune graft injury dataset).
- 24/06/2025
- 1 sample
- DAC: EGAC00001000205
- Technologies: Illumina HiSeq 4000, Illumina NovaSeq 6000
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003935 | Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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| EGAF00008766188 | cram | 3.1 GB |
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| EGAF00008766189 | cram | 2.3 GB |
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| EGAF00008766190 | cram | 2.3 GB |
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| EGAF00008766191 | cram | 1.7 GB |
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| EGAF00008766192 | cram | 8.4 GB |
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| EGAF00008766193 | cram | 8.3 GB |
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| EGAF00008766194 | cram | 7.0 GB |
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| EGAF00008766195 | cram | 9.7 GB |
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| EGAF00008766196 | cram | 7.4 GB |
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| EGAF00008766197 | cram | 9.8 GB |
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| EGAF00008766198 | cram | 10.2 GB |
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| EGAF00008766199 | cram | 7.2 GB |
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| EGAF00008766200 | cram | 9.8 GB |
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| EGAF00008766201 | cram | 6.2 GB |
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| EGAF00008766202 | cram | 7.6 GB |
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| EGAF00008766203 | cram | 5.8 GB |
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| EGAF00008766204 | cram | 9.8 GB |
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| EGAF00008766205 | cram | 6.5 GB |
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| EGAF00008766206 | cram | 7.1 GB |
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| EGAF00008766207 | cram | 7.0 GB |
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| 20 Files (137.4 GB) | ||||