HCA Organoid | Colon - a cohort-scale multi-omic atlas of human colon organoids and matched primary tissue biopsies.
Single-nucleus multiome sequencing data (snRNA-seq + snATAC-seq) from healthy tissue of 81 donors with colorectal cancer (71 matched organoid and primary tissue; 10 with one sample type only), generated as part of the Human Cell Atlas Organoid Project.
- 03/06/2026
- 1 sample
- DAC: EGAC00001003532
- Technology: Illumina NovaSeq 6000
Data Access Policy - HCA | Organoid - Colon
Please download and complete the Data Access Agreement, which is also available upon request to the Data Access Committee, and send it (via email) to the addresses listed in section II.e. The Data Access Committee will then evaluate your request. Download the data access agreement here: https://medical-epigenomics.org/data/access/daa_hca_organoid_colon.pdf
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001008434 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00009047417 | bam | 6.4 GB |
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| EGAF00009047418 | bam | 10.5 GB |
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| EGAF00009047419 | bam | 13.4 GB |
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| EGAF00009047420 | bam | 21.4 GB |
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| EGAF00009047421 | bam | 18.1 GB |
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| EGAF00009047422 | bam | 9.2 GB |
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| EGAF00009047423 | bam | 22.1 GB |
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| EGAF00009047424 | bam | 31.8 GB |
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| EGAF00009047425 | bam | 16.8 GB |
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| EGAF00009047426 | bam | 38.1 GB |
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| EGAF00009047427 | bam | 35.9 GB |
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| EGAF00009047428 | bam | 39.8 GB |
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| EGAF00009047429 | bam | 24.6 GB |
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| EGAF00009047430 | bam | 43.1 GB |
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| EGAF00009047431 | bam | 44.0 GB |
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| EGAF00009047432 | bam | 28.2 GB |
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| EGAF00009047433 | bam | 44.9 GB |
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| EGAF00009047434 | bam | 17.3 GB |
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| EGAF00009047435 | bam | 48.7 GB |
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| EGAF00009047436 | bam | 18.8 GB |
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| EGAF00009047437 | bam | 15.2 GB |
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| EGAF00009047438 | bam | 17.6 GB |
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| EGAF00009047439 | bam | 15.7 GB |
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| EGAF00009047440 | bam | 11.6 GB |
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| EGAF00009047441 | bam | 5.1 GB |
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| EGAF00009047442 | bam | 15.1 GB |
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| EGAF00009047443 | bam | 24.0 GB |
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| EGAF00009047444 | bam | 27.3 GB |
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| EGAF00009047445 | bam | 22.0 GB |
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| EGAF00009047446 | bam | 17.2 GB |
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| EGAF00009047447 | bam | 26.5 GB |
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| EGAF00009047448 | bam | 14.3 GB |
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| EGAF00009047449 | bam | 26.8 GB |
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| EGAF00009047450 | bam | 24.2 GB |
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| EGAF00009047451 | bam | 27.9 GB |
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| EGAF00009047452 | bam | 21.6 GB |
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| EGAF00009047453 | bam | 23.5 GB |
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| EGAF00009047454 | bam | 23.6 GB |
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| EGAF00009047455 | bam | 24.9 GB |
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| EGAF00009047456 | bam | 21.3 GB |
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| EGAF00009047457 | bam | 20.3 GB |
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| EGAF00009047458 | bam | 13.8 GB |
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| EGAF00009047459 | bam | 30.8 GB |
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| EGAF00009047460 | bam | 21.3 GB |
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| EGAF00009047461 | bam | 20.1 GB |
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| EGAF00009047463 | bam | 13.8 GB |
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| EGAF00009047464 | bam | 22.4 GB |
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| EGAF00009047465 | bam | 31.2 GB |
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| EGAF00009047466 | bam | 13.5 GB |
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| EGAF00009047467 | bam | 16.1 GB |
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| EGAF00009047468 | bam | 18.0 GB |
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| EGAF00009047469 | bam | 38.6 GB |
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| EGAF00009047470 | bam | 25.1 GB |
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| EGAF00009047471 | bam | 24.8 GB |
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| EGAF00009047472 | bam | 16.5 GB |
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| EGAF00009047473 | bam | 29.1 GB |
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| EGAF00009047474 | bam | 13.1 GB |
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| EGAF00009047475 | bam | 43.9 GB |
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| EGAF00009047476 | bam | 46.6 GB |
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| EGAF00009047477 | bam | 21.5 GB |
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| EGAF00009047478 | bam | 3.8 GB |
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| EGAF00009047480 | bam | 21.9 GB |
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| EGAF00009047481 | bam | 27.7 GB |
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| EGAF00009047482 | bam | 23.1 GB |
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| EGAF00009047483 | bam | 24.3 GB |
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| EGAF00009047484 | bam | 13.5 GB |
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| EGAF00009047485 | bam | 24.4 GB |
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| EGAF00009047486 | bam | 22.4 GB |
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| EGAF00009047487 | bam | 20.0 GB |
|
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| EGAF00009047488 | bam | 15.5 GB |
|
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| EGAF00009047489 | bam | 38.8 GB |
|
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| EGAF00009047490 | bam | 28.5 GB |
|
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| EGAF00009047491 | bam | 20.0 GB |
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| EGAF00009047492 | bam | 4.5 GB |
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| EGAF00009047493 | bam | 22.8 GB |
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| EGAF00009047494 | bam | 13.6 GB |
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| EGAF00009047495 | bam | 31.4 GB |
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| EGAF00009047496 | bam | 23.6 GB |
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| EGAF00009047497 | bam | 31.7 GB |
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| EGAF00009047498 | bam | 44.4 GB |
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| EGAF00009047499 | bam | 37.2 GB |
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| EGAF00009047500 | bam | 23.5 GB |
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| EGAF00009047501 | bam | 5.8 GB |
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| EGAF00009047502 | bam | 25.1 GB |
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| EGAF00009047503 | bam | 23.0 GB |
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| EGAF00009047504 | bam | 34.4 GB |
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| EGAF00009047505 | bam | 25.5 GB |
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| EGAF00009047506 | bam | 24.3 GB |
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| EGAF00009047507 | bam | 21.5 GB |
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| EGAF00009047508 | bam | 18.9 GB |
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| EGAF00009047509 | bam | 21.0 GB |
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| EGAF00009047511 | bam | 12.8 GB |
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| EGAF00009047512 | bam | 20.4 GB |
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| EGAF00009047513 | bam | 24.8 GB |
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| EGAF00009047514 | bam | 17.7 GB |
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| EGAF00009047515 | bam | 26.6 GB |
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| EGAF00009047516 | bam | 21.1 GB |
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| EGAF00009047517 | bam | 20.4 GB |
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| EGAF00009047518 | bam | 27.9 GB |
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| EGAF00009047519 | bam | 13.0 GB |
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| EGAF00009047520 | bam | 20.4 GB |
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| EGAF00009050447 | bam | 18.1 GB |
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| EGAF00009050448 | bam | 22.1 GB |
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| EGAF00009050449 | bam | 18.2 GB |
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| EGAF00009050450 | bam | 19.6 GB |
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| EGAF00009050451 | bam | 28.8 GB |
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| EGAF00009050452 | bam | 25.1 GB |
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| EGAF00009050453 | bam | 16.9 GB |
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| EGAF00009050454 | bam | 12.5 GB |
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| EGAF00009050455 | bam | 32.1 GB |
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| EGAF00009050456 | bam | 19.2 GB |
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| EGAF00009050457 | bam | 34.5 GB |
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| EGAF00009050458 | bam | 37.6 GB |
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| EGAF00009050459 | bam | 31.6 GB |
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| EGAF00009050466 | bam | 24.3 GB |
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| EGAF00009050468 | bam | 43.4 GB |
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| EGAF00009050473 | bam | 43.0 GB |
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| EGAF00009050475 | bam | 46.0 GB |
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| EGAF00009050476 | bam | 12.2 GB |
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| EGAF00009050479 | bam | 19.2 GB |
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| EGAF00009050488 | bam | 53.8 GB |
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| EGAF00009050491 | bam | 37.7 GB |
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| EGAF00009050496 | bam | 38.7 GB |
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| EGAF00009050498 | bam | 34.8 GB |
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| EGAF00009050504 | bam | 42.1 GB |
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| EGAF00009050516 | bam | 33.7 GB |
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| EGAF00009050522 | bam | 35.7 GB |
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| EGAF00009050523 | bam | 40.4 GB |
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| EGAF00009050524 | bam | 51.9 GB |
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| EGAF00009050538 | bam | 42.6 GB |
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| EGAF00009050539 | bam | 58.6 GB |
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| EGAF00009050542 | bam | 37.5 GB |
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| EGAF00009050543 | bam | 50.8 GB |
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| EGAF00009050547 | bam | 45.0 GB |
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| EGAF00009050550 | bam | 42.9 GB |
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| EGAF00009050551 | bam | 49.1 GB |
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| EGAF00009050571 | bam | 26.6 GB |
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| EGAF00009050572 | bam | 13.4 GB |
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| EGAF00009050574 | bam | 36.1 GB |
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| EGAF00009050581 | bam | 18.5 GB |
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| EGAF00009050591 | bam | 54.0 GB |
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| EGAF00009050592 | bam | 25.9 GB |
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| EGAF00009050593 | bam | 26.9 GB |
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| EGAF00009050595 | bam | 30.6 GB |
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| EGAF00009050597 | bam | 43.6 GB |
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| EGAF00009050607 | bam | 44.2 GB |
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| EGAF00009050629 | bam | 18.6 GB |
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| EGAF00009050640 | bam | 52.6 GB |
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| EGAF00009050641 | bam | 68.3 GB |
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| EGAF00009050652 | bam | 54.6 GB |
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| EGAF00009050655 | bam | 44.3 GB |
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| EGAF00009050659 | bam | 59.9 GB |
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| EGAF00009050665 | bam | 24.0 GB |
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| EGAF00009050674 | bam | 48.2 GB |
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| EGAF00009050677 | bam | 21.2 GB |
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| EGAF00009050687 | bam | 30.3 GB |
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| EGAF00009050696 | bam | 40.8 GB |
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| EGAF00009050699 | bam | 51.7 GB |
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| EGAF00009050701 | bam | 35.4 GB |
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| EGAF00009050709 | bam | 18.5 GB |
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| EGAF00009050719 | bam | 44.1 GB |
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| EGAF00009050720 | bam | 36.7 GB |
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| EGAF00009050734 | bam | 11.8 GB |
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| EGAF00009050748 | bam | 45.7 GB |
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| EGAF00009050752 | bam | 32.3 GB |
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| EGAF00009050771 | bam | 71.4 GB |
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| EGAF00009050790 | bam | 17.5 GB |
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| EGAF00009050797 | bam | 25.2 GB |
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| EGAF00009050806 | bam | 50.1 GB |
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| EGAF00009050807 | bam | 5.9 GB |
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| EGAF00009050809 | bam | 37.3 GB |
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| EGAF00009050831 | bam | 33.6 GB |
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| EGAF00009050832 | bam | 41.1 GB |
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| EGAF00009050833 | bam | 56.1 GB |
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| EGAF00009050851 | bam | 26.0 GB |
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| EGAF00009051569 | bam | 41.0 GB |
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| 176 Files (5.0 TB) | ||||