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RNASeq data for paper titled "Spatial Omics Resolves Adrenergic and Mesenchymal Cell States in Neuroblastoma"

This dataset contains 219 RNASeq samples. The data is total stranded transcriptome sequencing using the TruSeq Stranded Total RNA library preparation kit.

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DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Learn more about the PCGP, disease types, publications, the PCGP Data Access Committee, and instructions to access data via EGA: https://pecan.stjude.cloud/permalink/pcgp Complete the attached Data Access Agreement (DAA), adhering to the following guidance, and return it to pcgpdaccoordinator@stjude.org: - Requests must be made for individual datasets (EGAD ID), not full studies (EGAS ID). - A separate DAA must be submitted for each dataset AND all original pages must be included. - The first listed applicant should be the Principal Investigator, Head of Department, or Department Chair leading the project. This should not be a staff scientist or postdoctoral researcher. - The email address used to access the dataset(s) must be a work-related email, not a personal email. - The signature of the “Institutional or Administrative Authority” must be an individual with the authority to sign documents on behalf of the requesting institution. This individual is known as the Authorized Organizational Representative (AOR) and is typically someone in the requesting institution's legal department or grants office. Heads/Chairs of Departments cannot sign as the Institutional or Administrative Authority. - Not adhering to these policies will delay your application. Once we receive your completed application, the DAC review typically takes approximately 15-20 business days. - If we do not receive a completed DAA from you within 90 days, we will consider this application closed and reject your request in the EGA portal. You may resubmit later as needed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001008537 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00009253399 bam 3.9 GB
EGAF00009253400 bam 7.2 GB
EGAF00009253401 bam 5.8 GB
EGAF00009253402 bam 14.4 GB
EGAF00009253403 bam 6.5 GB
EGAF00009253404 bam 16.2 GB
EGAF00009253405 bam 9.5 GB
EGAF00009253406 bam 10.3 GB
EGAF00009253407 bam 30.5 GB
EGAF00009253408 bam 33.4 GB
EGAF00009253409 bam 35.6 GB
EGAF00009253410 bam 11.5 GB
EGAF00009253411 bam 7.4 GB
EGAF00009253412 bam 8.4 GB
EGAF00009253413 bam 13.3 GB
EGAF00009253414 bam 5.9 GB
EGAF00009253415 bam 15.5 GB
EGAF00009253416 bam 3.7 GB
EGAF00009253417 bam 3.8 GB
EGAF00009253418 bam 10.5 GB
EGAF00009253419 bam 6.6 GB
EGAF00009253420 bam 38.0 GB
EGAF00009253421 bam 35.2 GB
EGAF00009253422 bam 3.6 GB
EGAF00009253423 bam 40.4 GB
EGAF00009253424 bam 10.4 GB
EGAF00009253425 bam 21.4 GB
EGAF00009253426 bam 6.3 GB
EGAF00009253427 bam 3.5 GB
EGAF00009253428 bam 14.0 GB
EGAF00009253429 bam 6.0 GB
EGAF00009253430 bam 8.3 GB
EGAF00009253431 bam 7.3 GB
EGAF00009253432 bam 16.5 GB
EGAF00009253433 bam 26.5 GB
EGAF00009253434 bam 29.0 GB
EGAF00009253435 bam 7.0 GB
EGAF00009253436 bam 10.0 GB
EGAF00009253437 bam 22.3 GB
EGAF00009253438 bam 14.1 GB
EGAF00009253439 bam 12.9 GB
EGAF00009253440 bam 14.3 GB
EGAF00009253441 bam 12.9 GB
EGAF00009253442 bam 6.2 GB
EGAF00009253443 bam 6.3 GB
EGAF00009253444 bam 8.4 GB
EGAF00009253445 bam 5.6 GB
EGAF00009253446 bam 39.9 GB
EGAF00009253447 bam 10.6 GB
EGAF00009253448 bam 5.3 GB
EGAF00009253449 bam 6.6 GB
EGAF00009253450 bam 17.4 GB
EGAF00009253451 bam 7.7 GB
EGAF00009253452 bam 9.7 GB
EGAF00009253453 bam 7.7 GB
EGAF00009253454 bam 5.5 GB
EGAF00009253455 bam 11.6 GB
EGAF00009253456 bam 5.9 GB
EGAF00009253457 bam 13.0 GB
EGAF00009253458 bam 12.6 GB
EGAF00009253459 bam 11.7 GB
EGAF00009253460 bam 17.3 GB
EGAF00009253461 bam 21.3 GB
EGAF00009253462 bam 7.7 GB
EGAF00009253463 bam 11.2 GB
EGAF00009253464 bam 11.4 GB
EGAF00009253465 bam 7.0 GB
EGAF00009253466 bam 19.0 GB
EGAF00009253467 bam 9.1 GB
EGAF00009253468 bam 7.3 GB
EGAF00009253469 bam 10.7 GB
EGAF00009253470 bam 10.9 GB
EGAF00009253471 bam 14.4 GB
EGAF00009253472 bam 6.5 GB
EGAF00009253473 bam 5.8 GB
EGAF00009253474 bam 6.6 GB
EGAF00009253475 bam 19.1 GB
EGAF00009253476 bam 12.7 GB
EGAF00009253477 bam 18.7 GB
EGAF00009253478 bam 8.9 GB
EGAF00009253479 bam 12.7 GB
EGAF00009253480 bam 12.5 GB
EGAF00009253481 bam 8.2 GB
EGAF00009253482 bam 16.6 GB
EGAF00009253483 bam 20.0 GB
EGAF00009253484 bam 12.2 GB
EGAF00009253485 bam 14.5 GB
EGAF00009253486 bam 10.6 GB
EGAF00009253487 bam 12.5 GB
EGAF00009253488 bam 9.2 GB
EGAF00009253489 bam 9.8 GB
EGAF00009253490 bam 20.3 GB
EGAF00009253491 bam 6.9 GB
EGAF00009253492 bam 15.6 GB
EGAF00009253493 bam 6.2 GB
EGAF00009253494 bam 10.6 GB
EGAF00009253495 bam 11.6 GB
EGAF00009253496 bam 10.1 GB
EGAF00009253497 bam 62.1 GB
EGAF00009253498 bam 14.3 GB
EGAF00009253499 bam 12.2 GB
EGAF00009253500 bam 12.2 GB
EGAF00009253501 bam 15.9 GB
EGAF00009253502 bam 7.2 GB
EGAF00009253503 bam 16.8 GB
EGAF00009253504 bam 12.3 GB
EGAF00009253505 bam 13.4 GB
EGAF00009253506 bam 12.8 GB
EGAF00009253507 bam 11.8 GB
EGAF00009253508 bam 24.8 GB
EGAF00009253509 bam 10.2 GB
EGAF00009253510 bam 17.8 GB
EGAF00009253511 bam 12.3 GB
EGAF00009253512 bam 11.8 GB
EGAF00009253513 bam 15.9 GB
EGAF00009253514 bam 3.9 GB
EGAF00009253515 bam 9.5 GB
EGAF00009253516 bam 8.5 GB
EGAF00009253517 bam 20.0 GB
EGAF00009253518 bam 14.6 GB
EGAF00009253519 bam 11.0 GB
EGAF00009253520 bam 23.6 GB
EGAF00009253521 bam 13.8 GB
EGAF00009253522 bam 36.5 GB
EGAF00009253523 bam 12.6 GB
EGAF00009253524 bam 15.3 GB
EGAF00009253525 bam 9.4 GB
EGAF00009253526 bam 25.1 GB
EGAF00009253527 bam 13.7 GB
EGAF00009253528 bam 3.7 GB
EGAF00009253529 bam 7.7 GB
EGAF00009253530 bam 36.1 GB
EGAF00009253531 bam 19.4 GB
EGAF00009253532 bam 19.8 GB
EGAF00009253533 bam 6.8 GB
EGAF00009253534 bam 17.3 GB
EGAF00009253535 bam 10.6 GB
EGAF00009253536 bam 5.6 GB
EGAF00009253537 bam 13.6 GB
EGAF00009253538 bam 15.1 GB
EGAF00009253539 bam 6.5 GB
EGAF00009253540 bam 30.0 GB
EGAF00009253541 bam 10.6 GB
EGAF00009253542 bam 8.5 GB
EGAF00009253543 bam 2.6 GB
EGAF00009253544 bam 22.8 GB
EGAF00009253545 bam 12.8 GB
EGAF00009253546 bam 6.0 GB
EGAF00009253547 bam 11.9 GB
EGAF00009253548 bam 5.3 GB
EGAF00009253549 bam 13.2 GB
EGAF00009253550 bam 4.4 GB
EGAF00009253551 bam 17.1 GB
EGAF00009253552 bam 6.6 GB
EGAF00009253553 bam 7.3 GB
EGAF00009253554 bam 3.7 GB
EGAF00009253555 bam 14.6 GB
EGAF00009253556 bam 7.3 GB
EGAF00009253557 bam 8.9 GB
EGAF00009253558 bam 35.7 GB
EGAF00009253559 bam 10.9 GB
EGAF00009253560 bam 7.3 GB
EGAF00009253561 bam 6.9 GB
EGAF00009253562 bam 19.7 GB
EGAF00009253563 bam 10.9 GB
EGAF00009253564 bam 37.4 GB
EGAF00009253565 bam 17.6 GB
EGAF00009253566 bam 8.8 GB
EGAF00009253567 bam 9.5 GB
EGAF00009253568 bam 9.2 GB
EGAF00009253569 bam 15.0 GB
EGAF00009253570 bam 3.4 GB
EGAF00009253571 bam 6.8 GB
EGAF00009253572 bam 10.9 GB
EGAF00009253573 bam 21.1 GB
EGAF00009253574 bam 15.0 GB
EGAF00009253575 bam 14.1 GB
EGAF00009253576 bam 16.6 GB
EGAF00009253577 bam 15.2 GB
EGAF00009253578 bam 14.2 GB
EGAF00009253579 bam 7.3 GB
EGAF00009253580 bam 13.8 GB
EGAF00009253581 bam 15.2 GB
EGAF00009253582 bam 21.7 GB
EGAF00009253583 bam 9.2 GB
EGAF00009253584 bam 7.8 GB
EGAF00009253585 bam 7.3 GB
EGAF00009253586 bam 7.2 GB
EGAF00009253587 bam 8.3 GB
EGAF00009253588 bam 7.6 GB
EGAF00009253589 bam 8.1 GB
EGAF00009253590 bam 9.2 GB
EGAF00009253591 bam 15.0 GB
EGAF00009253592 bam 8.8 GB
EGAF00009253593 bam 13.9 GB
EGAF00009253594 bam 10.0 GB
EGAF00009253595 bam 13.9 GB
EGAF00009253596 bam 15.6 GB
EGAF00009253597 bam 7.3 GB
EGAF00009253598 bam 27.6 GB
EGAF00009253599 bam 17.0 GB
EGAF00009253600 bam 13.2 GB
EGAF00009253601 bam 31.1 GB
EGAF00009253602 bam 10.9 GB
EGAF00009253603 bam 15.0 GB
EGAF00009253604 bam 12.6 GB
EGAF00009253605 bam 16.6 GB
EGAF00009253606 bam 8.0 GB
EGAF00009253607 bam 11.4 GB
EGAF00009253608 bam 24.3 GB
EGAF00009253609 bam 13.2 GB
EGAF00009253610 bam 13.3 GB
EGAF00009253611 bam 18.9 GB
EGAF00009253612 bam 34.8 GB
EGAF00009253613 bam 16.7 GB
EGAF00009253614 bam 13.9 GB
EGAF00009253615 bam 7.2 GB
EGAF00009253616 bam 18.7 GB
EGAF00009253617 bam 7.1 GB
219 Files (3.0 TB)