About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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10X Chromium 3' scRNA sequencing of pre- and on-treatment HNSCC biopsy samples

We performed 10X Chromium 3' scRNA sequencing of 23 pre- and on-treatment HNSCC biopsy samples.

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VIB Policy for Data Access and Data Transfer

VIB Policy for Data Access and Data Transfer Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - The request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the request. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000037 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000050045 fastq.gz 1.2 GB Report
EGAF50000050046 fastq.gz 2.5 GB Report
EGAF50000050047 fastq.gz 5.1 GB Report
EGAF50000050048 fastq.gz 11.5 GB Report
EGAF50000050049 fastq.gz 18.8 GB Report
EGAF50000050050 fastq.gz 5.1 GB Report
EGAF50000050051 fastq.gz 11.2 GB Report
EGAF50000050052 fastq.gz 4.7 GB Report
EGAF50000050053 fastq.gz 16.5 GB Report
EGAF50000050054 fastq.gz 7.3 GB Report
EGAF50000050055 fastq.gz 15.0 GB Report
EGAF50000050056 fastq.gz 8.3 GB Report
EGAF50000050057 fastq.gz 15.6 GB Report
EGAF50000050058 fastq.gz 8.1 GB Report
EGAF50000050059 fastq.gz 7.1 GB Report
EGAF50000050060 fastq.gz 1.9 GB Report
EGAF50000050061 fastq.gz 15.5 GB Report
EGAF50000050062 fastq.gz 4.2 GB Report
EGAF50000050063 fastq.gz 7.9 GB Report
EGAF50000050064 fastq.gz 16.3 GB Report
EGAF50000050065 fastq.gz 7.4 GB Report
EGAF50000050066 fastq.gz 16.4 GB Report
EGAF50000050067 fastq.gz 5.6 GB Report
EGAF50000050068 fastq.gz 12.8 GB Report
EGAF50000050069 fastq.gz 6.6 GB Report
EGAF50000050070 fastq.gz 274.5 MB Report
EGAF50000050071 fastq.gz 3.6 GB Report
EGAF50000050075 fastq.gz 864.2 MB Report
EGAF50000050076 fastq.gz 2.0 GB Report
EGAF50000050157 fastq.gz 3.3 GB Report
EGAF50000050172 fastq.gz 8.3 GB Report
EGAF50000050173 fastq.gz 10.4 GB Report
EGAF50000050174 fastq.gz 7.4 GB Report
EGAF50000050175 fastq.gz 614.0 MB Report
EGAF50000050176 fastq.gz 1.4 GB Report
EGAF50000050177 fastq.gz 2.1 GB Report
EGAF50000050178 fastq.gz 1.0 GB Report
EGAF50000050179 fastq.gz 2.0 GB Report
EGAF50000050180 fastq.gz 7.0 GB Report
EGAF50000050181 fastq.gz 17.5 GB Report
EGAF50000050182 fastq.gz 17.3 GB Report
EGAF50000050183 fastq.gz 7.5 GB Report
EGAF50000050184 fastq.gz 3.4 GB Report
EGAF50000050185 fastq.gz 7.7 GB Report
EGAF50000050186 fastq.gz 8.1 GB Report
EGAF50000050187 fastq.gz 18.0 GB Report
46 Files (362.4 GB)