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Epigenomic timecourse of brain organoid development

Single-cell Cut&Tag of three histone modifications and chromatin accessibility over a timecourse of brain organoid development from pluripotency. We profiled 5 time points of brain organoid development and 2 time points of retinal organoid development. At each time point used scCut&Tag to profile histone modifications (H3K27me3, H3K27ac, H3K4me3) as well as multiome-seq (10X) to jointly profile transcriptome and chromatin accessibility from the same cell suspension. Library preparation was carried out with the 10x genomics platform.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000155 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000064866 fastq.gz 934.6 MB
EGAF50000064867 fastq.gz 932.7 MB
EGAF50000064868 fastq.gz 3.0 GB
EGAF50000064869 fastq.gz 283.0 MB
EGAF50000064870 fastq.gz 598.5 MB
EGAF50000064871 fastq.gz 51.8 MB
EGAF50000064872 fastq.gz 109.4 MB
EGAF50000064873 fastq.gz 239.0 MB
EGAF50000064874 fastq.gz 240.2 MB
EGAF50000064875 fastq.gz 50.5 MB
EGAF50000064876 fastq.gz 105.4 MB
EGAF50000064877 fastq.gz 56.9 MB
EGAF50000064878 fastq.gz 57.9 MB
EGAF50000064879 fastq.gz 131.6 MB
EGAF50000064880 fastq.gz 277.3 MB
EGAF50000064881 fastq.gz 279.3 MB
EGAF50000064882 fastq.gz 271.9 MB
EGAF50000064883 fastq.gz 275.1 MB
EGAF50000064884 fastq.gz 3.4 GB
EGAF50000064885 fastq.gz 188.8 MB
EGAF50000064886 fastq.gz 389.6 MB
EGAF50000064887 fastq.gz 787.7 MB
EGAF50000064888 fastq.gz 381.2 MB
EGAF50000064889 fastq.gz 412.0 MB
EGAF50000064890 fastq.gz 927.6 MB
EGAF50000064891 fastq.gz 415.9 MB
EGAF50000064892 fastq.gz 821.1 MB
EGAF50000064893 fastq.gz 1.3 GB
EGAF50000064894 fastq.gz 619.9 MB
EGAF50000064895 fastq.gz 1.3 GB
EGAF50000064896 fastq.gz 1.4 GB
EGAF50000064901 fastq.gz 2.7 GB
EGAF50000064902 fastq.gz 2.9 GB
EGAF50000064903 fastq.gz 29.1 GB
EGAF50000064907 fastq.gz 274.2 MB
EGAF50000064908 fastq.gz 703.6 MB
EGAF50000064909 fastq.gz 675.2 MB
EGAF50000064910 fastq.gz 304.7 MB
EGAF50000064911 fastq.gz 1.4 GB
EGAF50000064912 fastq.gz 680.9 MB
EGAF50000064913 fastq.gz 1.4 GB
EGAF50000064914 fastq.gz 346.3 MB
EGAF50000064915 fastq.gz 1.6 GB
EGAF50000064916 fastq.gz 787.4 MB
EGAF50000064917 fastq.gz 1.7 GB
EGAF50000064918 fastq.gz 286.4 MB
EGAF50000064919 fastq.gz 1.2 GB
EGAF50000064920 fastq.gz 614.5 MB
EGAF50000064921 fastq.gz 1.3 GB
EGAF50000064922 fastq.gz 1.0 GB
EGAF50000064923 fastq.gz 198.7 MB
EGAF50000064924 fastq.gz 1.8 GB
EGAF50000064925 fastq.gz 53.0 MB
EGAF50000064926 fastq.gz 112.4 MB
EGAF50000064927 fastq.gz 247.5 MB
EGAF50000064928 fastq.gz 249.0 MB
EGAF50000064929 fastq.gz 51.6 MB
EGAF50000064930 fastq.gz 107.9 MB
EGAF50000064931 fastq.gz 236.0 MB
EGAF50000064932 fastq.gz 237.7 MB
EGAF50000064933 fastq.gz 201.6 MB
EGAF50000064934 fastq.gz 893.8 MB
EGAF50000064935 fastq.gz 445.3 MB
EGAF50000064936 fastq.gz 895.6 MB
EGAF50000064937 fastq.gz 354.6 MB
EGAF50000064938 fastq.gz 1.6 GB
EGAF50000064939 fastq.gz 770.7 MB
EGAF50000064940 fastq.gz 1.6 GB
EGAF50000064941 fastq.gz 251.3 MB
EGAF50000064942 fastq.gz 1.1 GB
EGAF50000064943 fastq.gz 563.1 MB
EGAF50000064944 fastq.gz 257.1 MB
EGAF50000064945 fastq.gz 1.1 GB
EGAF50000064946 fastq.gz 582.1 MB
EGAF50000064947 fastq.gz 1.2 GB
EGAF50000064962 fastq.gz 52.9 MB
EGAF50000064963 fastq.gz 110.7 MB
EGAF50000064964 fastq.gz 239.6 MB
EGAF50000064965 fastq.gz 242.8 MB
EGAF50000064966 fastq.gz 53.8 MB
EGAF50000064967 fastq.gz 114.4 MB
EGAF50000064968 fastq.gz 252.4 MB
EGAF50000064969 fastq.gz 254.8 MB
EGAF50000064970 fastq.gz 54.0 MB
EGAF50000064971 fastq.gz 113.4 MB
EGAF50000064972 fastq.gz 247.5 MB
EGAF50000064973 fastq.gz 251.1 MB
EGAF50000064974 fastq.gz 564.4 MB
EGAF50000064975 fastq.gz 1.2 GB
EGAF50000064976 fastq.gz 2.5 GB
EGAF50000064977 fastq.gz 2.6 GB
EGAF50000064978 fastq.gz 170.5 MB
EGAF50000064979 fastq.gz 348.7 MB
EGAF50000064980 fastq.gz 748.8 MB
EGAF50000064981 fastq.gz 748.0 MB
EGAF50000064982 fastq.gz 167.6 MB
EGAF50000064983 fastq.gz 340.6 MB
EGAF50000064984 fastq.gz 734.7 MB
EGAF50000064985 fastq.gz 733.7 MB
EGAF50000064993 fastq.gz 1.2 GB
EGAF50000064994 fastq.gz 4.1 GB
EGAF50000064995 fastq.gz 9.6 GB
EGAF50000064996 fastq.gz 68.9 MB
EGAF50000064997 fastq.gz 283.9 MB
EGAF50000064998 fastq.gz 134.7 MB
EGAF50000064999 fastq.gz 290.5 MB
EGAF50000065000 fastq.gz 138.6 MB
EGAF50000065001 fastq.gz 298.7 MB
EGAF50000065002 fastq.gz 257.2 MB
EGAF50000065003 fastq.gz 1.1 GB
EGAF50000065004 fastq.gz 567.9 MB
EGAF50000065005 fastq.gz 1.1 GB
EGAF50000065006 fastq.gz 250.7 MB
EGAF50000065007 fastq.gz 1.1 GB
EGAF50000065008 fastq.gz 549.4 MB
EGAF50000065009 fastq.gz 1.1 GB
EGAF50000065010 fastq.gz 211.4 MB
EGAF50000065011 fastq.gz 953.6 MB
EGAF50000065012 fastq.gz 487.7 MB
EGAF50000065013 fastq.gz 952.0 MB
EGAF50000065014 fastq.gz 207.9 MB
EGAF50000065015 fastq.gz 475.7 MB
EGAF50000065016 fastq.gz 253.9 MB
EGAF50000065017 fastq.gz 1.1 GB
EGAF50000065018 fastq.gz 555.7 MB
EGAF50000065019 fastq.gz 1.1 GB
EGAF50000065020 fastq.gz 248.6 MB
EGAF50000065021 fastq.gz 1.1 GB
EGAF50000065022 fastq.gz 538.9 MB
EGAF50000065023 fastq.gz 1.1 GB
EGAF50000065024 fastq.gz 677.8 MB
EGAF50000065025 fastq.gz 1.5 GB
EGAF50000065026 fastq.gz 3.2 GB
EGAF50000065027 fastq.gz 3.3 GB
EGAF50000065028 fastq.gz 629.6 MB
EGAF50000065029 fastq.gz 1.4 GB
EGAF50000065030 fastq.gz 3.0 GB
EGAF50000065031 fastq.gz 1.3 GB
EGAF50000065032 fastq.gz 315.0 MB
EGAF50000065033 fastq.gz 299.9 MB
EGAF50000065034 fastq.gz 657.9 MB
EGAF50000065035 fastq.gz 1.3 GB
EGAF50000065036 fastq.gz 334.2 MB
EGAF50000065037 fastq.gz 744.6 MB
EGAF50000065038 fastq.gz 722.7 MB
EGAF50000065039 fastq.gz 2.4 GB
EGAF50000065040 fastq.gz 5.6 GB
EGAF50000065041 fastq.gz 52.8 MB
EGAF50000065042 fastq.gz 111.5 MB
EGAF50000065043 fastq.gz 244.1 MB
EGAF50000065044 fastq.gz 246.0 MB
EGAF50000065045 fastq.gz 129.3 MB
EGAF50000065046 fastq.gz 271.8 MB
EGAF50000065047 fastq.gz 272.8 MB
EGAF50000065048 fastq.gz 55.2 MB
EGAF50000065049 fastq.gz 124.2 MB
EGAF50000065050 fastq.gz 259.7 MB
EGAF50000065051 fastq.gz 260.7 MB
EGAF50000065052 fastq.gz 57.8 MB
EGAF50000065053 fastq.gz 130.3 MB
EGAF50000065054 fastq.gz 736.0 MB
EGAF50000065055 fastq.gz 3.4 GB
EGAF50000065056 fastq.gz 1.6 GB
EGAF50000065057 fastq.gz 800.9 MB
EGAF50000065058 fastq.gz 808.0 MB
EGAF50000065059 fastq.gz 186.0 MB
EGAF50000065060 fastq.gz 794.6 MB
EGAF50000065061 fastq.gz 918.0 MB
EGAF50000065062 fastq.gz 207.5 MB
EGAF50000065063 fastq.gz 402.4 MB
EGAF50000065064 fastq.gz 902.0 MB
EGAF50000065065 fastq.gz 1.7 GB
EGAF50000065066 fastq.gz 363.3 MB
EGAF50000065067 fastq.gz 1.7 GB
EGAF50000065068 fastq.gz 827.5 MB
EGAF50000065069 fastq.gz 1.7 GB
EGAF50000065070 fastq.gz 371.7 MB
EGAF50000065071 fastq.gz 1.7 GB
EGAF50000065072 fastq.gz 854.8 MB
EGAF50000065073 fastq.gz 827.5 MB
EGAF50000065074 fastq.gz 190.8 MB
EGAF50000065075 fastq.gz 835.8 MB
EGAF50000065076 fastq.gz 425.3 MB
EGAF50000065077 fastq.gz 812.7 MB
EGAF50000065078 fastq.gz 187.3 MB
EGAF50000065079 fastq.gz 296.1 MB
EGAF50000065080 fastq.gz 1.3 GB
EGAF50000065081 fastq.gz 682.6 MB
EGAF50000065082 fastq.gz 1.4 GB
EGAF50000065083 fastq.gz 304.1 MB
EGAF50000065084 fastq.gz 1.3 GB
EGAF50000065085 fastq.gz 705.9 MB
EGAF50000065086 fastq.gz 1.3 GB
EGAF50000065087 fastq.gz 291.4 MB
EGAF50000065088 fastq.gz 313.6 MB
EGAF50000065089 fastq.gz 1.4 GB
EGAF50000065090 fastq.gz 673.3 MB
EGAF50000065091 fastq.gz 915.1 MB
EGAF50000065092 fastq.gz 212.9 MB
EGAF50000065093 fastq.gz 452.0 MB
EGAF50000065094 fastq.gz 920.9 MB
EGAF50000065095 fastq.gz 1.0 GB
EGAF50000065096 fastq.gz 229.7 MB
EGAF50000065097 fastq.gz 999.6 MB
EGAF50000065098 fastq.gz 493.0 MB
EGAF50000065099 fastq.gz 1.2 GB
EGAF50000065111 fastq.gz 21.3 GB
EGAF50000065131 fastq.gz 3.2 GB
EGAF50000065132 fastq.gz 3.5 GB
EGAF50000065133 fastq.gz 34.9 GB
EGAF50000065134 fastq.gz 25.3 GB
EGAF50000065138 fastq.gz 1.5 GB
EGAF50000065139 fastq.gz 6.9 GB
EGAF50000065140 fastq.gz 3.7 GB
EGAF50000065141 fastq.gz 7.0 GB
EGAF50000065142 fastq.gz 1.5 GB
EGAF50000065143 fastq.gz 6.8 GB
EGAF50000065144 fastq.gz 3.7 GB
EGAF50000065145 fastq.gz 6.9 GB
EGAF50000065146 fastq.gz 1.7 GB
EGAF50000065147 fastq.gz 8.0 GB
EGAF50000065148 fastq.gz 4.4 GB
EGAF50000065149 fastq.gz 8.3 GB
EGAF50000065150 fastq.gz 1.7 GB
EGAF50000065151 fastq.gz 7.9 GB
EGAF50000065152 fastq.gz 4.4 GB
EGAF50000065153 fastq.gz 8.2 GB
EGAF50000065181 fastq.gz 261.2 MB
EGAF50000065182 fastq.gz 1.2 GB
EGAF50000065183 fastq.gz 590.9 MB
EGAF50000065184 fastq.gz 1.3 GB
EGAF50000065212 fastq.gz 60.9 MB
EGAF50000065213 fastq.gz 107.4 MB
EGAF50000065214 fastq.gz 384.8 MB
EGAF50000065215 fastq.gz 1.8 GB
EGAF50000065216 fastq.gz 847.5 MB
EGAF50000065217 fastq.gz 1.5 GB
EGAF50000065218 fastq.gz 3.1 GB
EGAF50000065219 fastq.gz 154.9 MB
EGAF50000065220 fastq.gz 279.4 MB
EGAF50000065221 fastq.gz 467.7 MB
EGAF50000065222 fastq.gz 1.0 GB
EGAF50000065223 fastq.gz 1.0 GB
EGAF50000065224 fastq.gz 877.3 MB
EGAF50000065225 fastq.gz 435.1 MB
EGAF50000065226 fastq.gz 878.7 MB
EGAF50000065227 fastq.gz 1.1 GB
EGAF50000065229 fastq.gz 223.5 MB
EGAF50000065230 fastq.gz 454.7 MB
EGAF50000065231 fastq.gz 1.0 GB
EGAF50000065235 fastq.gz 228.5 MB
EGAF50000065236 fastq.gz 229.9 MB
EGAF50000065241 fastq.gz 651.8 MB
EGAF50000065242 fastq.gz 3.1 GB
EGAF50000065243 fastq.gz 256.3 MB
EGAF50000065244 fastq.gz 260.4 MB
EGAF50000065261 fastq.gz 228.4 MB
EGAF50000065262 fastq.gz 61.9 MB
EGAF50000065263 fastq.gz 110.3 MB
EGAF50000065264 fastq.gz 260.9 MB
EGAF50000065265 fastq.gz 265.3 MB
EGAF50000065266 fastq.gz 304.6 MB
EGAF50000065267 fastq.gz 1.3 GB
EGAF50000065268 fastq.gz 657.9 MB
EGAF50000065269 fastq.gz 1.3 GB
EGAF50000065270 fastq.gz 1.2 GB
EGAF50000065271 fastq.gz 4.1 GB
EGAF50000065272 fastq.gz 9.7 GB
EGAF50000065273 fastq.gz 720.2 MB
EGAF50000065274 fastq.gz 2.4 GB
EGAF50000065275 fastq.gz 5.7 GB
EGAF50000065282 fastq.gz 291.6 MB
EGAF50000065283 fastq.gz 70.3 MB
EGAF50000065284 fastq.gz 211.0 MB
EGAF50000065285 fastq.gz 153.3 MB
EGAF50000065286 fastq.gz 711.2 MB
EGAF50000065287 fastq.gz 682.6 MB
EGAF50000065289 fastq.gz 1.3 GB
EGAF50000065290 fastq.gz 678.1 MB
EGAF50000065291 fastq.gz 1.4 GB
EGAF50000065292 fastq.gz 1.5 GB
EGAF50000065293 fastq.gz 1.4 GB
EGAF50000065294 fastq.gz 1.5 GB
EGAF50000065295 fastq.gz 1.6 GB
284 Files (432.2 GB)