About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Transcriptome atlas of brain organoid developent

Single-cell Cut&Tag of three histone modifications and chromatin accessibility over a timecourse of brain organoid development from pluripotency. We profiled 5 time points of brain organoid development and 2 time points of retinal organoid development. We used scRNA-seq to profile transcriptome. Library preparation was carried out with the 10x genomics platform.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000155 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000064948 fastq.gz 456.1 MB
EGAF50000064949 fastq.gz 1.5 GB Report
EGAF50000064950 fastq.gz 3.4 GB Report
EGAF50000064951 fastq.gz 450.4 MB Report
EGAF50000064952 fastq.gz 1.5 GB Report
EGAF50000064953 fastq.gz 3.4 GB Report
EGAF50000064954 fastq.gz 1.8 GB Report
EGAF50000064955 fastq.gz 4.1 GB Report
EGAF50000064956 fastq.gz 581.6 MB Report
EGAF50000064957 fastq.gz 1.9 GB Report
EGAF50000064958 fastq.gz 4.1 GB Report
EGAF50000064959 fastq.gz 496.9 MB Report
EGAF50000064960 fastq.gz 1.7 GB Report
EGAF50000064961 fastq.gz 3.9 GB Report
EGAF50000064986 fastq.gz 545.0 MB Report
EGAF50000064987 fastq.gz 1.8 GB Report
EGAF50000064988 fastq.gz 4.1 GB Report
EGAF50000064989 fastq.gz 585.0 MB Report
EGAF50000064990 fastq.gz 1.9 GB Report
EGAF50000064991 fastq.gz 4.2 GB Report
EGAF50000064992 fastq.gz 3.9 GB Report
EGAF50000064993 fastq.gz 1.2 GB Report
EGAF50000064994 fastq.gz 4.1 GB Report
EGAF50000064995 fastq.gz 9.6 GB Report
EGAF50000065038 fastq.gz 722.7 MB Report
EGAF50000065039 fastq.gz 2.4 GB Report
EGAF50000065040 fastq.gz 5.6 GB Report
EGAF50000065112 fastq.gz 709.2 MB Report
EGAF50000065113 fastq.gz 2.4 GB Report
EGAF50000065114 fastq.gz 5.7 GB Report
EGAF50000065128 fastq.gz 511.5 MB Report
EGAF50000065129 fastq.gz 1.7 GB Report
EGAF50000065130 fastq.gz 3.9 GB Report
EGAF50000065135 fastq.gz 513.1 MB Report
EGAF50000065136 fastq.gz 1.7 GB Report
EGAF50000065137 fastq.gz 3.9 GB Report
EGAF50000065172 fastq.gz 721.4 MB Report
EGAF50000065173 fastq.gz 2.5 GB Report
EGAF50000065174 fastq.gz 5.8 GB Report
EGAF50000065175 fastq.gz 707.8 MB Report
EGAF50000065176 fastq.gz 2.4 GB Report
EGAF50000065177 fastq.gz 5.8 GB Report
EGAF50000065178 fastq.gz 721.1 MB Report
EGAF50000065179 fastq.gz 2.5 GB Report
EGAF50000065180 fastq.gz 5.9 GB Report
EGAF50000065232 fastq.gz 495.5 MB Report
EGAF50000065233 fastq.gz 1.7 GB Report
EGAF50000065234 fastq.gz 548.0 MB Report
EGAF50000065270 fastq.gz 1.2 GB Report
EGAF50000065271 fastq.gz 4.1 GB Report
EGAF50000065272 fastq.gz 9.7 GB Report
EGAF50000065273 fastq.gz 720.2 MB Report
EGAF50000065274 fastq.gz 2.4 GB Report
EGAF50000065275 fastq.gz 5.7 GB Report
54 Files (144.2 GB)