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Profiling of gene expression and epigenomics in the fetal brain

scRNA-seq and Cut&Tag from a sample of the human fetal brain. To compare neurogenesis in the primary human brain with that in organoids, we profiled transcriptome and chromatin accessibility (10X multiome) as well as bulk Cut&Tag of histone modifications H3K27me3, H3K27ac and H3K4me3. We used a human brain sample from GW 19 for all experiments.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000155 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000064897 fastq.gz 5.7 GB
EGAF50000064898 fastq.gz 6.0 GB
EGAF50000064899 fastq.gz 1.0 GB
EGAF50000064900 fastq.gz 2.8 GB
EGAF50000065100 fastq.gz 1.1 GB
EGAF50000065101 fastq.gz 3.2 GB
EGAF50000065102 fastq.gz 5.7 GB
EGAF50000065103 fastq.gz 6.1 GB
EGAF50000065104 fastq.gz 1.1 GB
EGAF50000065105 fastq.gz 3.1 GB
EGAF50000065106 fastq.gz 5.0 GB
EGAF50000065107 fastq.gz 5.2 GB
EGAF50000065108 fastq.gz 2.8 GB
EGAF50000065109 fastq.gz 5.1 GB
EGAF50000065110 fastq.gz 5.3 GB
EGAF50000065154 fastq.gz 590.9 MB
EGAF50000065155 fastq.gz 5.1 GB
EGAF50000065156 fastq.gz 522.9 MB
EGAF50000065157 fastq.gz 592.1 MB
EGAF50000065158 fastq.gz 2.1 GB
EGAF50000065159 fastq.gz 682.5 MB
EGAF50000065160 fastq.gz 2.6 GB
EGAF50000065161 fastq.gz 6.3 GB
EGAF50000065162 fastq.gz 96.0 MB
EGAF50000065163 fastq.gz 113.6 MB
EGAF50000065164 fastq.gz 644.4 MB
EGAF50000065165 fastq.gz 691.1 MB
EGAF50000065166 fastq.gz 2.6 GB
EGAF50000065167 fastq.gz 6.4 GB
EGAF50000065168 fastq.gz 66.3 MB
EGAF50000065169 fastq.gz 78.3 MB
EGAF50000065170 fastq.gz 83.5 MB
EGAF50000065171 fastq.gz 90.0 MB
EGAF50000065210 fastq.gz 632.8 MB
EGAF50000065211 fastq.gz 5.2 GB
EGAF50000065237 fastq.gz 1.0 GB
EGAF50000065238 fastq.gz 515.9 MB
EGAF50000065239 fastq.gz 2.1 GB
38 Files (98.0 GB)