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APS-1 Global Gene Expression

Single cell sequencing of expanded regulatory T cells (Tregs) in 9 APS-1 patients and 9 age and gender matched controls. Gene expression (GEX) libraries were generated by using the Library Construction Kit from 10x genomics.

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University of Bergen Rare Monogenic Autoimmune Syndrome (APS-1) Data Access Policy

Data Access Policy for Genomic APS-1 datasets archived in Federated EGA Norway 1. Data Access Committee Each dataset submitted by University of Bergen (UiB) for archival and controlled access sharing in Federated EGA Norway, has a DAC appointed by UiB to govern controlled access to the dataset according to this Data Access Policy. Multiple datasets may be affiliated to a single DAC. UiB as an institution has the overall data controller responsibility, and will appoint a DAC based on proper internal procedures that ensures involvement of institutional functions such as Data Protection Officer, legal control, etc. 2. Data use conditions To advise any would-be requester on how the data can be used, Data Use Ontology codes (DUO) is associated to each dataset, providing the requester more insights into which terms for sharing and use of the data that applies, and that needs to be addressed as part of the communication with the DAC in a data access request. No access to any UiB dataset deposited in FEGA Norway can be granted to a requester before all applicable conditions and requirements for the use and management of the data have been agreed upon in a signed Data Access Agreement. 3. Data Access Agreement The Data Access Agreement (DAA) will include requirements specific for both the dataset and the management of the data in the hands of the requester applying for access, and will thus be an individual DAA for each case of granted access to a dataset. As a rule, a DAA for an UiB dataset will take the form of a Data Transfer Agreement, where the requester will commit to take on responsibilities and duties as a data controller. 4. Processing of requests for access The overall data access approval process at UiB can be summarised as follows: ● DAC for a UiB dataset is contacted by a potential data requester ● DAC continues communication with requester to understand the purpose of use, i.e. research setting the dataset is envisioned for by requester, to identify if data sharing is possible directly under current conditions for the dataset, or actions such as re-consenting is needed and desirable to accommodate the proposed research setting/data use. ● A Data Access Agreement is jointly formulated and agreed upon, with the DAC following internal UiB to include the Data Protection Officer and Division for research support. ● When a completed DAA has been signed between the parties, and archived at UiB, the DAC will instruct the FEGA Norway node to release the data to the requester,

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000181 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000079968 fastq.gz 3.4 GB
EGAF50000079969 fastq.gz 7.7 GB
EGAF50000079970 fastq.gz 3.7 GB
EGAF50000079971 fastq.gz 8.6 GB
EGAF50000079972 fastq.gz 4.7 GB
EGAF50000079973 fastq.gz 11.0 GB
EGAF50000079974 fastq.gz 4.2 GB
EGAF50000079975 fastq.gz 9.8 GB
EGAF50000079976 fastq.gz 3.2 GB
EGAF50000079977 fastq.gz 7.4 GB
EGAF50000079978 fastq.gz 3.0 GB
EGAF50000079979 fastq.gz 7.0 GB
EGAF50000079980 fastq.gz 4.2 GB
EGAF50000079981 fastq.gz 9.9 GB
EGAF50000079982 fastq.gz 3.9 GB
EGAF50000079983 fastq.gz 8.9 GB
EGAF50000079984 fastq.gz 3.4 GB
EGAF50000079985 fastq.gz 7.7 GB
EGAF50000079986 fastq.gz 3.6 GB
EGAF50000079987 fastq.gz 8.4 GB
EGAF50000079988 fastq.gz 3.9 GB
EGAF50000079989 fastq.gz 9.1 GB
EGAF50000079990 fastq.gz 3.5 GB
EGAF50000079991 fastq.gz 8.2 GB
EGAF50000079992 fastq.gz 3.4 GB
EGAF50000079993 fastq.gz 7.9 GB
EGAF50000079994 fastq.gz 4.5 GB
EGAF50000079995 fastq.gz 10.6 GB
EGAF50000079996 fastq.gz 4.0 GB
EGAF50000079997 fastq.gz 9.4 GB
EGAF50000079998 fastq.gz 3.8 GB
EGAF50000079999 fastq.gz 8.9 GB
EGAF50000080000 fastq.gz 4.6 GB
EGAF50000080001 fastq.gz 10.5 GB
EGAF50000080002 fastq.gz 3.4 GB
EGAF50000080003 fastq.gz 8.0 GB
36 Files (227.2 GB)