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APS-1 Immune Panel Sequencing

Single cell sequencing of expanded regulatory T cells (Tregs) in 8 APS-1 patients and 8 age and gender matched controls (same patients and controls as for global gene expression and TCR sequencing, excluding one for each group (control sample and patient sample #13)). Each Sample has two technical repeats. 10x Genomics Target Hybridization Kit and Human Immunology Panel was used with GEX libraries.

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University of Bergen Rare Monogenic Autoimmune Syndrome (APS-1) Data Access Policy

Data Access Policy for Genomic APS-1 datasets archived in Federated EGA Norway 1. Data Access Committee Each dataset submitted by University of Bergen (UiB) for archival and controlled access sharing in Federated EGA Norway, has a DAC appointed by UiB to govern controlled access to the dataset according to this Data Access Policy. Multiple datasets may be affiliated to a single DAC. UiB as an institution has the overall data controller responsibility, and will appoint a DAC based on proper internal procedures that ensures involvement of institutional functions such as Data Protection Officer, legal control, etc. 2. Data use conditions To advise any would-be requester on how the data can be used, Data Use Ontology codes (DUO) is associated to each dataset, providing the requester more insights into which terms for sharing and use of the data that applies, and that needs to be addressed as part of the communication with the DAC in a data access request. No access to any UiB dataset deposited in FEGA Norway can be granted to a requester before all applicable conditions and requirements for the use and management of the data have been agreed upon in a signed Data Access Agreement. 3. Data Access Agreement The Data Access Agreement (DAA) will include requirements specific for both the dataset and the management of the data in the hands of the requester applying for access, and will thus be an individual DAA for each case of granted access to a dataset. As a rule, a DAA for an UiB dataset will take the form of a Data Transfer Agreement, where the requester will commit to take on responsibilities and duties as a data controller. 4. Processing of requests for access The overall data access approval process at UiB can be summarised as follows: ● DAC for a UiB dataset is contacted by a potential data requester ● DAC continues communication with requester to understand the purpose of use, i.e. research setting the dataset is envisioned for by requester, to identify if data sharing is possible directly under current conditions for the dataset, or actions such as re-consenting is needed and desirable to accommodate the proposed research setting/data use. ● A Data Access Agreement is jointly formulated and agreed upon, with the DAC following internal UiB to include the Data Protection Officer and Division for research support. ● When a completed DAA has been signed between the parties, and archived at UiB, the DAC will instruct the FEGA Norway node to release the data to the requester,

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000181 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000080004 fastq.gz 249.6 MB
EGAF50000080005 fastq.gz 628.2 MB
EGAF50000080006 fastq.gz 236.7 MB
EGAF50000080007 fastq.gz 600.7 MB
EGAF50000080008 fastq.gz 294.8 MB
EGAF50000080009 fastq.gz 734.1 MB
EGAF50000080010 fastq.gz 287.3 MB
EGAF50000080011 fastq.gz 720.3 MB
EGAF50000080012 fastq.gz 534.2 MB
EGAF50000080013 fastq.gz 1.4 GB
EGAF50000080014 fastq.gz 496.8 MB
EGAF50000080015 fastq.gz 1.3 GB
EGAF50000080016 fastq.gz 326.1 MB
EGAF50000080017 fastq.gz 815.1 MB
EGAF50000080018 fastq.gz 312.6 MB
EGAF50000080019 fastq.gz 786.9 MB
EGAF50000080020 fastq.gz 308.0 MB
EGAF50000080021 fastq.gz 796.2 MB
EGAF50000080022 fastq.gz 280.1 MB
EGAF50000080023 fastq.gz 730.2 MB
EGAF50000080024 fastq.gz 298.9 MB
EGAF50000080025 fastq.gz 761.7 MB
EGAF50000080026 fastq.gz 279.7 MB
EGAF50000080027 fastq.gz 718.2 MB
EGAF50000080028 fastq.gz 295.2 MB
EGAF50000080029 fastq.gz 749.5 MB
EGAF50000080030 fastq.gz 271.3 MB
EGAF50000080031 fastq.gz 699.3 MB
EGAF50000080032 fastq.gz 247.7 MB
EGAF50000080033 fastq.gz 643.8 MB
EGAF50000080034 fastq.gz 268.5 MB
EGAF50000080035 fastq.gz 685.9 MB
EGAF50000080036 fastq.gz 393.2 MB
EGAF50000080037 fastq.gz 1.0 GB
EGAF50000080038 fastq.gz 361.2 MB
EGAF50000080039 fastq.gz 948.9 MB
EGAF50000080040 fastq.gz 264.6 MB
EGAF50000080041 fastq.gz 671.2 MB
EGAF50000080042 fastq.gz 242.8 MB
EGAF50000080043 fastq.gz 620.5 MB
EGAF50000080044 fastq.gz 245.0 MB
EGAF50000080045 fastq.gz 631.3 MB
EGAF50000080046 fastq.gz 223.6 MB
EGAF50000080047 fastq.gz 581.7 MB
EGAF50000080048 fastq.gz 342.8 MB
EGAF50000080049 fastq.gz 861.5 MB
EGAF50000080050 fastq.gz 331.5 MB
EGAF50000080051 fastq.gz 853.2 MB
EGAF50000080052 fastq.gz 307.8 MB
EGAF50000080053 fastq.gz 798.2 MB
EGAF50000080054 fastq.gz 326.7 MB
EGAF50000080055 fastq.gz 827.0 MB
EGAF50000080056 fastq.gz 338.5 MB
EGAF50000080057 fastq.gz 876.0 MB
EGAF50000080058 fastq.gz 360.1 MB
EGAF50000080059 fastq.gz 910.2 MB
EGAF50000080060 fastq.gz 367.5 MB
EGAF50000080061 fastq.gz 943.1 MB
EGAF50000080062 fastq.gz 336.6 MB
EGAF50000080063 fastq.gz 856.7 MB
EGAF50000080064 fastq.gz 331.3 MB
EGAF50000080065 fastq.gz 844.3 MB
EGAF50000080066 fastq.gz 304.7 MB
EGAF50000080067 fastq.gz 782.2 MB
64 Files (35.8 GB)