About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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APS-1 Immune Panel Sequencing

Single cell sequencing of expanded regulatory T cells (Tregs) in 8 APS-1 patients and 8 age and gender matched controls (same patients and controls as for global gene expression and TCR sequencing, excluding one for each group (control sample and patient sample #13)). Each Sample has two technical repeats. 10x Genomics Target Hybridization Kit and Human Immunology Panel was used with GEX libraries.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

University of Bergen Rare Monogenic Autoimmune Syndrome (APS-1) Data Access Policy

Data Access Policy for Genomic APS-1 datasets archived in Federated EGA Norway 1. Data Access Committee Each dataset submitted by University of Bergen (UiB) for archival and controlled access sharing in Federated EGA Norway, has a DAC appointed by UiB to govern controlled access to the dataset according to this Data Access Policy. Multiple datasets may be affiliated to a single DAC. UiB as an institution has the overall data controller responsibility, and will appoint a DAC based on proper internal procedures that ensures involvement of institutional functions such as Data Protection Officer, legal control, etc. 2. Data use conditions To advise any would-be requester on how the data can be used, Data Use Ontology codes (DUO) is associated to each dataset, providing the requester more insights into which terms for sharing and use of the data that applies, and that needs to be addressed as part of the communication with the DAC in a data access request. No access to any UiB dataset deposited in FEGA Norway can be granted to a requester before all applicable conditions and requirements for the use and management of the data have been agreed upon in a signed Data Access Agreement. 3. Data Access Agreement The Data Access Agreement (DAA) will include requirements specific for both the dataset and the management of the data in the hands of the requester applying for access, and will thus be an individual DAA for each case of granted access to a dataset. As a rule, a DAA for an UiB dataset will take the form of a Data Transfer Agreement, where the requester will commit to take on responsibilities and duties as a data controller. 4. Processing of requests for access The overall data access approval process at UiB can be summarised as follows: ● DAC for a UiB dataset is contacted by a potential data requester ● DAC continues communication with requester to understand the purpose of use, i.e. research setting the dataset is envisioned for by requester, to identify if data sharing is possible directly under current conditions for the dataset, or actions such as re-consenting is needed and desirable to accommodate the proposed research setting/data use. ● A Data Access Agreement is jointly formulated and agreed upon, with the DAC following internal UiB to include the Data Protection Officer and Division for research support. ● When a completed DAA has been signed between the parties, and archived at UiB, the DAC will instruct the FEGA Norway node to release the data to the requester,

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000181 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000080004 fastq.gz 249.6 MB
Federated EGA
EGAF50000080005 fastq.gz 628.2 MB
Federated EGA
EGAF50000080006 fastq.gz 236.7 MB
Federated EGA
EGAF50000080007 fastq.gz 600.7 MB
Federated EGA
EGAF50000080008 fastq.gz 294.8 MB
Federated EGA
EGAF50000080009 fastq.gz 734.1 MB
Federated EGA
EGAF50000080010 fastq.gz 287.3 MB
Federated EGA
EGAF50000080011 fastq.gz 720.3 MB
Federated EGA
EGAF50000080012 fastq.gz 534.2 MB
Federated EGA
EGAF50000080013 fastq.gz 1.4 GB
Federated EGA
EGAF50000080014 fastq.gz 496.8 MB
Federated EGA
EGAF50000080015 fastq.gz 1.3 GB
Federated EGA
EGAF50000080016 fastq.gz 326.1 MB
Federated EGA
EGAF50000080017 fastq.gz 815.1 MB
Federated EGA
EGAF50000080018 fastq.gz 312.6 MB
Federated EGA
EGAF50000080019 fastq.gz 786.9 MB
Federated EGA
EGAF50000080020 fastq.gz 308.0 MB
Federated EGA
EGAF50000080021 fastq.gz 796.2 MB
Federated EGA
EGAF50000080022 fastq.gz 280.1 MB
Federated EGA
EGAF50000080023 fastq.gz 730.2 MB
Federated EGA
EGAF50000080024 fastq.gz 298.9 MB
Federated EGA
EGAF50000080025 fastq.gz 761.7 MB
Federated EGA
EGAF50000080026 fastq.gz 279.7 MB
Federated EGA
EGAF50000080027 fastq.gz 718.2 MB
Federated EGA
EGAF50000080028 fastq.gz 295.2 MB
Federated EGA
EGAF50000080029 fastq.gz 749.5 MB
Federated EGA
EGAF50000080030 fastq.gz 271.3 MB
Federated EGA
EGAF50000080031 fastq.gz 699.3 MB
Federated EGA
EGAF50000080032 fastq.gz 247.7 MB
Federated EGA
EGAF50000080033 fastq.gz 643.8 MB
Federated EGA
EGAF50000080034 fastq.gz 268.5 MB
Federated EGA
EGAF50000080035 fastq.gz 685.9 MB
Federated EGA
EGAF50000080036 fastq.gz 393.2 MB
Federated EGA
EGAF50000080037 fastq.gz 1.0 GB
Federated EGA
EGAF50000080038 fastq.gz 361.2 MB
Federated EGA
EGAF50000080039 fastq.gz 948.9 MB
Federated EGA
EGAF50000080040 fastq.gz 264.6 MB
Federated EGA
EGAF50000080041 fastq.gz 671.2 MB
Federated EGA
EGAF50000080042 fastq.gz 242.8 MB
Federated EGA
EGAF50000080043 fastq.gz 620.5 MB
Federated EGA
EGAF50000080044 fastq.gz 245.0 MB
Federated EGA
EGAF50000080045 fastq.gz 631.3 MB
Federated EGA
EGAF50000080046 fastq.gz 223.6 MB
Federated EGA
EGAF50000080047 fastq.gz 581.7 MB
Federated EGA
EGAF50000080048 fastq.gz 342.8 MB
Federated EGA
EGAF50000080049 fastq.gz 861.5 MB
Federated EGA
EGAF50000080050 fastq.gz 331.5 MB
Federated EGA
EGAF50000080051 fastq.gz 853.2 MB
Federated EGA
EGAF50000080052 fastq.gz 307.8 MB
Federated EGA
EGAF50000080053 fastq.gz 798.2 MB
Federated EGA
EGAF50000080054 fastq.gz 326.7 MB
Federated EGA
EGAF50000080055 fastq.gz 827.0 MB
Federated EGA
EGAF50000080056 fastq.gz 338.5 MB
Federated EGA
EGAF50000080057 fastq.gz 876.0 MB
Federated EGA
EGAF50000080058 fastq.gz 360.1 MB
Federated EGA
EGAF50000080059 fastq.gz 910.2 MB
Federated EGA
EGAF50000080060 fastq.gz 367.5 MB
Federated EGA
EGAF50000080061 fastq.gz 943.1 MB
Federated EGA
EGAF50000080062 fastq.gz 336.6 MB
Federated EGA
EGAF50000080063 fastq.gz 856.7 MB
Federated EGA
EGAF50000080064 fastq.gz 331.3 MB
Federated EGA
EGAF50000080065 fastq.gz 844.3 MB
Federated EGA
EGAF50000080066 fastq.gz 304.7 MB
Federated EGA
EGAF50000080067 fastq.gz 782.2 MB
Federated EGA
64 Files (35.8 GB)