About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Visium Spatial tramscriptomics data set

This data set contains raw FASTQ files and processed files of spatial transcriptomics of 6 EMD samples collected from MM patients. The processed files contain the h5 expression matrices, the Image of the Visium slide, and a TSV of spatial coordinates. Patients included in this data set are PT01A, PT01B, PT02, PT03, PT07, PT08, PT09, PT10, and PT11.

Request Access

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

MSNZ AGRasche AG Riedel Data Access Policy

Access to the generated data is made available upon completion of the data access agreement, which is subject to review by the data access committee and exclusive granting to qualified investigators for appropriate utilization.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000227 RNASeq
  • We included three more patients that we added to our dataset in the revision process of the paper
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000088678 fq.gz 241.9 MB Report
EGAF50000088679 fq.gz 496.9 MB Report
EGAF50000088680 fq.gz 371.2 MB Report
EGAF50000088681 fq.gz 779.7 MB
EGAF50000088682 fastq 41.7 GB Report
EGAF50000088683 fastq 49.8 GB Report
EGAF50000088684 fastq 26.6 GB Report
EGAF50000088685 fastq 22.3 GB Report
EGAF50000088686 fq.gz 1.6 GB Report
EGAF50000088687 fq.gz 3.2 GB Report
EGAF50000088688 fastq.gz 605.8 MB Report
EGAF50000088689 fastq.gz 1.3 GB Report
EGAF50000088694 fastq.gz 3.3 GB Report
EGAF50000088695 fastq.gz 1.5 GB Report
EGAF50000088696 rar 18.9 MB
EGAF50000088697 rar 17.6 MB
EGAF50000088700 rar 11.3 MB
EGAF50000088701 rar 7.1 MB
EGAF50000088702 rar 7.6 MB
EGAF50000424939 fastq.gz 1.8 GB
EGAF50000424940 fastq.gz 3.8 GB
EGAF50000424941 fastq.gz 5.6 GB
EGAF50000424942 fastq.gz 2.5 GB
EGAF50000424944 fastq.gz 1.4 GB
EGAF50000424945 fastq.gz 3.0 GB
EGAF50000424947 zip 13.2 MB
EGAF50000424948 zip 11.3 MB
EGAF50000424949 zip 15.1 MB
28 Files (171.9 GB)