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single cell data from HPV-positive head and neck cancer patients receiving induction CTLA-4 and PD-1 immune checkpoint blockade

Baseline and on-treatment tumor samples from human papillomavirus-positive oropharynx cancer patients receiving anti-CTLA-4 and anti-PD-1 immune checkpoint blockade were analyzed by single-cell RNA and TCR sequencing.

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THE HPV-ASSOCIATED CANCER CONSORTIUM - DATA ACCESS AND USE AGREEMENT

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to the data sets which have been submitted to the European Genome Archive (EGA) for the restricted access by scientists working at legitimate academic institutions who have agreed to comply with the terms of a Data Access Agreement drafted by the HPV-associated Cancer Consortium Data Access Committee. There are a number of steps that a researcher must take to obtain access to this data. The process is overseen by our Data Access Committee, called the HPV-associated Cancer Consortium Data Access Committee. To reach the committee, please email Dr. Keiko Akagi at kakagi@mdanderson.org. Please be advised that we the undersigned investigators each are authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We confirm that this submission is consistent with the informed consent of the participants of the study and to the best of our knowledge is in accordance with applicable laws and regulations. Sincerely, David E. Symer, M.D., Ph.D. Maura L. Gillison, M.D., Ph.D. Keiko Akagi, Ph.D.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000335 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000107540 fastq.gz 448.9 MB
EGAF50000107541 fastq.gz 4.5 GB
EGAF50000107542 fastq.gz 4.8 GB
EGAF50000107543 fastq.gz 313.6 MB
EGAF50000107544 fastq.gz 2.8 GB
EGAF50000107545 fastq.gz 3.0 GB
EGAF50000107546 fastq.gz 365.4 MB
EGAF50000107547 fastq.gz 3.6 GB
EGAF50000107548 fastq.gz 3.8 GB
EGAF50000107549 fastq.gz 620.2 MB
EGAF50000107550 fastq.gz 6.2 GB
EGAF50000107551 fastq.gz 6.8 GB
EGAF50000107552 fastq.gz 861.5 MB
EGAF50000107553 fastq.gz 8.6 GB
EGAF50000107554 fastq.gz 9.2 GB
EGAF50000107555 fastq.gz 269.8 MB
EGAF50000107556 fastq.gz 2.6 GB
EGAF50000107557 fastq.gz 2.7 GB
EGAF50000107558 fastq.gz 258.3 MB
EGAF50000107559 fastq.gz 2.5 GB
EGAF50000107560 fastq.gz 2.6 GB
EGAF50000107561 fastq.gz 305.3 MB
EGAF50000107562 fastq.gz 2.9 GB
EGAF50000107563 fastq.gz 3.1 GB
EGAF50000107564 fastq.gz 399.1 MB
EGAF50000107565 fastq.gz 3.9 GB
EGAF50000107566 fastq.gz 4.2 GB
EGAF50000107567 fastq.gz 448.6 MB
EGAF50000107568 fastq.gz 4.4 GB
EGAF50000107569 fastq.gz 4.7 GB
EGAF50000107570 fastq.gz 658.7 MB
EGAF50000107571 fastq.gz 6.7 GB
EGAF50000107572 fastq.gz 7.2 GB
EGAF50000107573 fastq.gz 135.1 MB
EGAF50000107574 fastq.gz 1.3 GB
EGAF50000107575 fastq.gz 1.3 GB
EGAF50000107576 fastq.gz 20.4 MB
EGAF50000107577 fastq.gz 166.9 MB
EGAF50000107578 fastq.gz 180.2 MB
EGAF50000107579 fastq.gz 151.7 MB
EGAF50000107580 fastq.gz 1.5 GB
EGAF50000107581 fastq.gz 1.5 GB
EGAF50000107582 fastq.gz 243.9 MB
EGAF50000107583 fastq.gz 2.4 GB
EGAF50000107584 fastq.gz 2.6 GB
EGAF50000107585 fastq.gz 34.7 MB
EGAF50000107586 fastq.gz 280.4 MB
EGAF50000107587 fastq.gz 304.0 MB
EGAF50000107588 fastq.gz 54.4 MB
EGAF50000107589 fastq.gz 470.5 MB
EGAF50000107590 fastq.gz 499.5 MB
EGAF50000107591 fastq.gz 131.2 MB
EGAF50000107592 fastq.gz 1.2 GB
EGAF50000107593 fastq.gz 1.2 GB
EGAF50000107594 fastq.gz 276.1 MB
EGAF50000107595 fastq.gz 2.7 GB
EGAF50000107596 fastq.gz 2.7 GB
EGAF50000107597 fastq.gz 206.8 MB
EGAF50000107598 fastq.gz 1.9 GB
EGAF50000107599 fastq.gz 1.9 GB
EGAF50000107600 fastq.gz 280.9 MB
EGAF50000107601 fastq.gz 2.5 GB
EGAF50000107602 fastq.gz 2.7 GB
EGAF50000107603 fastq.gz 183.2 MB
EGAF50000107604 fastq.gz 1.6 GB
EGAF50000107605 fastq.gz 1.7 GB
EGAF50000107606 fastq.gz 258.6 MB
EGAF50000107607 fastq.gz 2.4 GB
EGAF50000107608 fastq.gz 2.5 GB
EGAF50000107609 fastq.gz 253.4 MB
EGAF50000107610 fastq.gz 2.3 GB
EGAF50000107611 fastq.gz 2.5 GB
EGAF50000107612 fastq.gz 676.0 MB
EGAF50000107613 fastq.gz 6.3 GB
EGAF50000107614 fastq.gz 6.9 GB
EGAF50000107615 fastq.gz 204.7 MB
EGAF50000107616 fastq.gz 2.1 GB
EGAF50000107617 fastq.gz 2.1 GB
EGAF50000107618 fastq.gz 255.5 MB
EGAF50000107619 fastq.gz 2.3 GB
EGAF50000107620 fastq.gz 2.5 GB
EGAF50000107621 fastq.gz 202.4 MB
EGAF50000107622 fastq.gz 2.0 GB
EGAF50000107623 fastq.gz 1.9 GB
EGAF50000107624 fastq.gz 529.5 MB
EGAF50000107625 fastq.gz 5.2 GB
EGAF50000107626 fastq.gz 5.5 GB
EGAF50000107627 fastq.gz 77.4 MB
EGAF50000107628 fastq.gz 654.9 MB
EGAF50000107629 fastq.gz 721.9 MB
EGAF50000107630 fastq.gz 333.8 MB
EGAF50000107631 fastq.gz 3.4 GB
EGAF50000107632 fastq.gz 3.7 GB
EGAF50000107633 fastq.gz 82.8 MB
EGAF50000107634 fastq.gz 747.1 MB
EGAF50000107635 fastq.gz 822.6 MB
EGAF50000107636 fastq.gz 87.9 MB
EGAF50000107637 fastq.gz 757.4 MB
EGAF50000107638 fastq.gz 811.0 MB
EGAF50000107639 fastq.gz 583.9 MB
EGAF50000107640 fastq.gz 5.7 GB
EGAF50000107641 fastq.gz 6.1 GB
EGAF50000107642 fastq.gz 214.6 MB
EGAF50000107643 fastq.gz 2.1 GB
EGAF50000107644 fastq.gz 2.3 GB
EGAF50000107645 fastq.gz 307.0 MB
EGAF50000107646 fastq.gz 3.0 GB
EGAF50000107647 fastq.gz 3.2 GB
EGAF50000107648 fastq.gz 283.8 MB
EGAF50000107649 fastq.gz 2.8 GB
EGAF50000107650 fastq.gz 2.8 GB
EGAF50000107651 fastq.gz 286.0 MB
EGAF50000107652 fastq.gz 2.8 GB
EGAF50000107653 fastq.gz 2.8 GB
EGAF50000107654 fastq.gz 239.7 MB
EGAF50000107655 fastq.gz 2.2 GB
EGAF50000107656 fastq.gz 2.3 GB
EGAF50000107657 fastq.gz 567.9 MB
EGAF50000107658 fastq.gz 5.5 GB
EGAF50000107659 fastq.gz 5.6 GB
EGAF50000107660 fastq.gz 157.0 MB
EGAF50000107661 fastq.gz 1.5 GB
EGAF50000107662 fastq.gz 1.5 GB
EGAF50000107663 fastq.gz 374.0 MB
EGAF50000107664 fastq.gz 3.8 GB
EGAF50000107665 fastq.gz 3.8 GB
EGAF50000107666 fastq.gz 330.2 MB
EGAF50000107667 fastq.gz 3.2 GB
EGAF50000107668 fastq.gz 3.3 GB
EGAF50000107669 fastq.gz 89.3 MB
EGAF50000107670 fastq.gz 816.2 MB
EGAF50000107671 fastq.gz 822.2 MB
EGAF50000107672 fastq.gz 214.0 MB
EGAF50000107673 fastq.gz 2.0 GB
EGAF50000107674 fastq.gz 2.0 GB
EGAF50000107675 fastq.gz 5.1 MB
EGAF50000107676 fastq.gz 36.8 MB
EGAF50000107677 fastq.gz 39.8 MB
EGAF50000107678 fastq.gz 11.4 MB
EGAF50000107679 fastq.gz 94.5 MB
EGAF50000107680 fastq.gz 97.5 MB
EGAF50000107681 fastq.gz 410.7 MB
EGAF50000107682 fastq.gz 3.9 GB
EGAF50000107683 fastq.gz 4.1 GB
EGAF50000107684 fastq.gz 134.2 MB
EGAF50000107685 fastq.gz 1.3 GB
EGAF50000107686 fastq.gz 1.3 GB
EGAF50000107687 fastq.gz 116.7 MB
EGAF50000107688 fastq.gz 1.1 GB
EGAF50000107689 fastq.gz 1.1 GB
EGAF50000107690 fastq.gz 11.3 MB
EGAF50000107691 fastq.gz 90.1 MB
EGAF50000107692 fastq.gz 97.3 MB
EGAF50000107693 fastq.gz 261.4 MB
EGAF50000107694 fastq.gz 2.5 GB
EGAF50000107695 fastq.gz 2.7 GB
EGAF50000107696 fastq.gz 193.7 MB
EGAF50000107697 fastq.gz 1.9 GB
EGAF50000107698 fastq.gz 1.9 GB
EGAF50000107699 fastq.gz 126.4 MB
EGAF50000107700 fastq.gz 1.2 GB
EGAF50000107701 fastq.gz 1.2 GB
EGAF50000107702 fastq.gz 657.0 MB
EGAF50000107703 fastq.gz 6.5 GB
EGAF50000107704 fastq.gz 6.9 GB
EGAF50000107705 fastq.gz 126.1 MB
EGAF50000107706 fastq.gz 1.1 GB
EGAF50000107707 fastq.gz 1.1 GB
EGAF50000107708 fastq.gz 174.9 MB
EGAF50000107709 fastq.gz 1.6 GB
EGAF50000107710 fastq.gz 1.7 GB
EGAF50000107711 fastq.gz 392.6 MB
EGAF50000107712 fastq.gz 3.7 GB
EGAF50000107713 fastq.gz 3.8 GB
EGAF50000107714 fastq.gz 423.1 MB
EGAF50000107715 fastq.gz 4.2 GB
EGAF50000107716 fastq.gz 4.3 GB
EGAF50000107717 fastq.gz 197.8 MB
EGAF50000107718 fastq.gz 1.9 GB
EGAF50000107719 fastq.gz 1.9 GB
EGAF50000107720 fastq.gz 207.9 MB
EGAF50000107721 fastq.gz 1.9 GB
EGAF50000107722 fastq.gz 1.9 GB
EGAF50000107723 fastq.gz 100.2 MB
EGAF50000107724 fastq.gz 879.8 MB
EGAF50000107725 fastq.gz 922.1 MB
EGAF50000107726 fastq.gz 182.7 MB
EGAF50000107727 fastq.gz 1.6 GB
EGAF50000107728 fastq.gz 1.7 GB
EGAF50000107729 fastq.gz 40.4 MB
EGAF50000107730 fastq.gz 337.4 MB
EGAF50000107731 fastq.gz 359.9 MB
EGAF50000107732 fastq.gz 83.2 MB
EGAF50000107733 fastq.gz 726.1 MB
EGAF50000107734 fastq.gz 779.7 MB
EGAF50000107735 fastq.gz 64.6 MB
EGAF50000107736 fastq.gz 468.0 MB
EGAF50000107737 fastq.gz 478.2 MB
EGAF50000107738 fastq.gz 50.7 MB
EGAF50000107739 fastq.gz 361.4 MB
EGAF50000107740 fastq.gz 377.3 MB
EGAF50000107741 fastq.gz 62.0 MB
EGAF50000107742 fastq.gz 444.1 MB
EGAF50000107743 fastq.gz 460.1 MB
EGAF50000107744 fastq.gz 79.5 MB
EGAF50000107745 fastq.gz 573.0 MB
EGAF50000107746 fastq.gz 599.6 MB
EGAF50000107747 fastq.gz 84.1 MB
EGAF50000107748 fastq.gz 633.4 MB
EGAF50000107749 fastq.gz 663.9 MB
EGAF50000107750 fastq.gz 55.9 MB
EGAF50000107751 fastq.gz 402.8 MB
EGAF50000107752 fastq.gz 409.9 MB
EGAF50000107753 fastq.gz 54.9 MB
EGAF50000107754 fastq.gz 391.3 MB
EGAF50000107755 fastq.gz 404.0 MB
EGAF50000107756 fastq.gz 74.0 MB
EGAF50000107757 fastq.gz 541.5 MB
EGAF50000107758 fastq.gz 553.4 MB
EGAF50000107759 fastq.gz 59.4 MB
EGAF50000107760 fastq.gz 453.4 MB
EGAF50000107761 fastq.gz 466.2 MB
EGAF50000107762 fastq.gz 65.2 MB
EGAF50000107763 fastq.gz 480.4 MB
EGAF50000107764 fastq.gz 472.3 MB
EGAF50000107765 fastq.gz 41.8 MB
EGAF50000107766 fastq.gz 293.9 MB
EGAF50000107767 fastq.gz 306.0 MB
EGAF50000107768 fastq.gz 31.6 MB
EGAF50000107769 fastq.gz 209.3 MB
EGAF50000107770 fastq.gz 215.0 MB
EGAF50000107771 fastq.gz 20.0 MB
EGAF50000107772 fastq.gz 136.9 MB
EGAF50000107773 fastq.gz 142.0 MB
EGAF50000107774 fastq.gz 22.7 MB
EGAF50000107775 fastq.gz 155.0 MB
EGAF50000107776 fastq.gz 161.2 MB
EGAF50000107777 fastq.gz 70.7 MB
EGAF50000107778 fastq.gz 505.1 MB
EGAF50000107779 fastq.gz 526.6 MB
EGAF50000107780 fastq.gz 30.1 MB
EGAF50000107781 fastq.gz 203.7 MB
EGAF50000107782 fastq.gz 218.3 MB
EGAF50000107783 fastq.gz 14.2 MB
EGAF50000107784 fastq.gz 92.6 MB
EGAF50000107785 fastq.gz 100.1 MB
EGAF50000107786 fastq.gz 63.5 MB
EGAF50000107787 fastq.gz 489.2 MB
EGAF50000107788 fastq.gz 466.9 MB
EGAF50000107789 fastq.gz 62.0 MB
EGAF50000107790 fastq.gz 509.6 MB
EGAF50000107791 fastq.gz 471.1 MB
EGAF50000107792 fastq.gz 79.5 MB
EGAF50000107793 fastq.gz 655.6 MB
EGAF50000107794 fastq.gz 594.4 MB
EGAF50000107795 fastq.gz 81.8 MB
EGAF50000107796 fastq.gz 591.5 MB
EGAF50000107797 fastq.gz 624.3 MB
EGAF50000107798 fastq.gz 84.0 MB
EGAF50000107799 fastq.gz 593.8 MB
EGAF50000107800 fastq.gz 619.5 MB
EGAF50000107801 fastq.gz 68.1 MB
EGAF50000107802 fastq.gz 569.4 MB
EGAF50000107803 fastq.gz 519.1 MB
EGAF50000107804 fastq.gz 57.4 MB
EGAF50000107805 fastq.gz 388.4 MB
EGAF50000107806 fastq.gz 407.9 MB
EGAF50000107807 fastq.gz 78.8 MB
EGAF50000107808 fastq.gz 618.8 MB
EGAF50000107809 fastq.gz 643.1 MB
EGAF50000107810 fastq.gz 55.3 MB
EGAF50000107811 fastq.gz 434.0 MB
EGAF50000107812 fastq.gz 419.3 MB
EGAF50000107813 fastq.gz 41.2 MB
EGAF50000107814 fastq.gz 313.9 MB
EGAF50000107815 fastq.gz 304.6 MB
EGAF50000107816 fastq.gz 66.7 MB
EGAF50000107817 fastq.gz 485.4 MB
EGAF50000107818 fastq.gz 454.9 MB
EGAF50000107819 fastq.gz 63.0 MB
EGAF50000107820 fastq.gz 474.7 MB
EGAF50000107821 fastq.gz 468.6 MB
EGAF50000107822 fastq.gz 6.8 MB
EGAF50000107823 fastq.gz 48.1 MB
EGAF50000107824 fastq.gz 53.9 MB
EGAF50000107825 fastq.gz 105.0 MB
EGAF50000107826 fastq.gz 768.8 MB
EGAF50000107827 fastq.gz 761.6 MB
EGAF50000107828 fastq.gz 46.0 MB
EGAF50000107829 fastq.gz 316.2 MB
EGAF50000107830 fastq.gz 334.4 MB
EGAF50000107831 fastq.gz 45.3 MB
EGAF50000107832 fastq.gz 321.1 MB
EGAF50000107833 fastq.gz 323.3 MB
EGAF50000107834 fastq.gz 99.2 MB
EGAF50000107835 fastq.gz 756.3 MB
EGAF50000107836 fastq.gz 787.1 MB
EGAF50000107837 fastq.gz 76.0 MB
EGAF50000107838 fastq.gz 560.6 MB
EGAF50000107839 fastq.gz 593.3 MB
EGAF50000107840 fastq.gz 69.3 MB
EGAF50000107841 fastq.gz 507.3 MB
EGAF50000107842 fastq.gz 539.1 MB
EGAF50000107843 fastq.gz 76.9 MB
EGAF50000107844 fastq.gz 579.7 MB
EGAF50000107845 fastq.gz 553.2 MB
EGAF50000107846 fastq.gz 69.3 MB
EGAF50000107847 fastq.gz 524.1 MB
EGAF50000107848 fastq.gz 505.9 MB
EGAF50000107849 fastq.gz 70.7 MB
EGAF50000107850 fastq.gz 530.4 MB
EGAF50000107851 fastq.gz 500.5 MB
EGAF50000107852 fastq.gz 69.0 MB
EGAF50000107853 fastq.gz 531.8 MB
EGAF50000107854 fastq.gz 503.5 MB
EGAF50000107855 fastq.gz 58.1 MB
EGAF50000107856 fastq.gz 435.3 MB
EGAF50000107857 fastq.gz 419.2 MB
EGAF50000107858 fastq.gz 79.3 MB
EGAF50000107859 fastq.gz 580.1 MB
EGAF50000107860 fastq.gz 554.2 MB
EGAF50000107861 fastq.gz 68.5 MB
EGAF50000107862 fastq.gz 516.3 MB
EGAF50000107863 fastq.gz 478.2 MB
EGAF50000107864 fastq.gz 57.2 MB
EGAF50000107865 fastq.gz 421.1 MB
EGAF50000107866 fastq.gz 398.0 MB
EGAF50000107867 fastq.gz 59.2 MB
EGAF50000107868 fastq.gz 434.4 MB
EGAF50000107869 fastq.gz 416.1 MB
EGAF50000107870 fastq.gz 1.3 MB
EGAF50000107871 fastq.gz 7.1 MB
EGAF50000107872 fastq.gz 7.2 MB
EGAF50000107873 fastq.gz 7.7 MB
EGAF50000107874 fastq.gz 52.4 MB
EGAF50000107875 fastq.gz 52.6 MB
EGAF50000107876 fastq.gz 28.3 MB
EGAF50000107877 fastq.gz 215.0 MB
EGAF50000107878 fastq.gz 219.9 MB
EGAF50000107879 fastq.gz 17.1 MB
EGAF50000107880 fastq.gz 125.2 MB
EGAF50000107881 fastq.gz 125.7 MB
EGAF50000107882 fastq.gz 25.4 MB
EGAF50000107883 fastq.gz 190.4 MB
EGAF50000107884 fastq.gz 193.7 MB
EGAF50000107885 fastq.gz 5.2 MB
EGAF50000107886 fastq.gz 32.9 MB
EGAF50000107887 fastq.gz 35.5 MB
EGAF50000107888 fastq.gz 36.0 MB
EGAF50000107889 fastq.gz 270.9 MB
EGAF50000107890 fastq.gz 278.6 MB
EGAF50000107891 fastq.gz 24.2 MB
EGAF50000107892 fastq.gz 176.7 MB
EGAF50000107893 fastq.gz 179.7 MB
EGAF50000107894 fastq.gz 21.5 MB
EGAF50000107895 fastq.gz 157.2 MB
EGAF50000107896 fastq.gz 160.6 MB
EGAF50000107897 fastq.gz 40.4 MB
EGAF50000107898 fastq.gz 309.7 MB
EGAF50000107899 fastq.gz 318.7 MB
EGAF50000107900 fastq.gz 37.9 MB
EGAF50000107901 fastq.gz 260.1 MB
EGAF50000107902 fastq.gz 267.7 MB
EGAF50000107903 fastq.gz 53.7 MB
EGAF50000107904 fastq.gz 379.1 MB
EGAF50000107905 fastq.gz 391.0 MB
EGAF50000107906 fastq.gz 41.7 MB
EGAF50000107907 fastq.gz 318.1 MB
EGAF50000107908 fastq.gz 317.9 MB
EGAF50000107909 fastq.gz 46.6 MB
EGAF50000107910 fastq.gz 361.1 MB
EGAF50000107911 fastq.gz 363.5 MB
EGAF50000107912 fastq.gz 23.2 MB
EGAF50000107913 fastq.gz 167.7 MB
EGAF50000107914 fastq.gz 170.4 MB
EGAF50000107915 fastq.gz 45.4 MB
EGAF50000107916 fastq.gz 332.9 MB
EGAF50000107917 fastq.gz 342.7 MB
EGAF50000107918 fastq.gz 22.5 MB
EGAF50000107919 fastq.gz 154.7 MB
EGAF50000107920 fastq.gz 156.1 MB
EGAF50000107921 fastq.gz 42.7 MB
EGAF50000107922 fastq.gz 300.1 MB
EGAF50000107923 fastq.gz 300.8 MB
EGAF50000107924 fastq.gz 32.9 MB
EGAF50000107925 fastq.gz 218.9 MB
EGAF50000107926 fastq.gz 219.4 MB
EGAF50000107927 fastq.gz 18.7 MB
EGAF50000107928 fastq.gz 122.8 MB
EGAF50000107929 fastq.gz 125.3 MB
390 Files (407.5 GB)