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targeted DNA sequencing data

a total number of 203 targeted DNA sequencing lymphoma samples

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University health network data access commitee; EGAC00001000912

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom the Data Access Committee (DAC) grants access to the Data. This includes the User, and those individuals under the direct supervision of the User, as well as any other individuals listed in Appendix II. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access, as is outlined in the Appendix 1 attached hereto. Data Producers: The Principal Investigator responsible for the creation of this Data and other investigators responsible for the creation of this Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. Research Ethics Board Approval shall mean approval of the Project by the User Institution’s research ethics board or other research ethics board or independent review board for whom said User Institution obtains research ethics approval(s). User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. University Health Network: The University Health Network (UHN) is the largest clinical and research hospital in Canada. UHN is affiliated with the University of Toronto and is a member of the Toronto Academic Health Science Network. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) within the Research Purposes, and only in accordance with Research Ethics Board Approval, and any conditions or restrictions imposed pursuant to such Research Ethics Board Approval. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise breach the anonymity of the Research Participants, including agreeing to not attempt to re-identify or contact any Research Participant. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect the Data. Despite the confidentiality of the Data, the User Institution may publish aggregate data and other results arising from use of the Data and may refer to the Data by reference to the accession number(s) as documented in Appendix I in further support of any publication resulting from use of said Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of re-identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data in a way that could re-identify the Research Participants, even if access to that other data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data and enter into a separate Data Access Agreement. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or provision of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees recognize the contribution of the Data Producers and include a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. 11. The User Institution agrees to destroy/delete the Data held, once it is no longer being used for the Project, or in the event that the User departs the User Institution or otherwise can no longer complete the Project, with the proviso that the User Institution can retain a copy of the Data for archival purposes only in conformity with audit or legal requirements. 12. The User Institution will notify the DAC within 30 days of any changes or departures of the User, at which point the Project will terminate and the User Institution delete or destroy the Data (as per Section 11) unless otherwise agreed by the DAC. 13. The User Institution will notify the DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Either party may terminate this agreement by written notice to the other party. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 19. The Parties agree to remain silent on choice of law.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000435 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008487317 bam 2.0 GB
EGAF00008487319 bam 1.9 GB
EGAF00008487320 bam 1.2 GB
EGAF00008487321 bam 1.3 GB
EGAF00008487322 bam 2.3 GB
EGAF00008487323 bam 1.1 GB
EGAF00008487328 bam 1.2 GB
EGAF00008487329 bam 1.2 GB
EGAF00008487332 bam 1.4 GB
EGAF00008487343 bam 1.3 GB
EGAF00008487347 bam 1.5 GB
EGAF00008487349 bam 2.6 GB
EGAF00008487350 bam 2.7 GB
EGAF00008487351 bam 3.8 GB
EGAF00008487352 bam 5.9 GB
EGAF00008487357 bam 4.1 GB
EGAF00008487358 bam 2.5 GB
EGAF00008487359 bam 3.5 GB
EGAF00008487361 bam 1.6 GB
EGAF00008487362 bam 1.9 GB
EGAF00008487364 bam 2.2 GB
EGAF00008487365 bam 1.8 GB
EGAF00008487366 bam 1.6 GB
EGAF00008487367 bam 1.2 GB
EGAF00008487369 bam 1.4 GB
EGAF00008487373 bam 1.5 GB
EGAF00008487375 bam 1.8 GB
EGAF00008487381 bam 1.3 GB
EGAF00008487382 bam 1.1 GB
EGAF00008487383 bam 759.5 MB
EGAF00008487386 bam 1.5 GB
EGAF00008487389 bam 1.5 GB
EGAF00008487394 bam 2.0 GB
EGAF00008487395 bam 1.9 GB
EGAF00008487396 bam 1.0 GB
EGAF00008487397 bam 1.3 GB
EGAF00008487399 bam 1.6 GB
EGAF00008487400 bam 2.4 GB
EGAF00008487401 bam 1.6 GB
EGAF00008487402 bam 1.4 GB
EGAF00008487403 bam 1.6 GB
EGAF00008487405 bam 1.2 GB
EGAF00008487406 bam 1.2 GB
EGAF00008487408 bam 1.1 GB
EGAF00008487409 bam 1.2 GB
EGAF00008487411 bam 2.0 GB
EGAF00008487412 bam 2.2 GB
EGAF00008487413 bam 2.2 GB
EGAF00008487414 bam 1.6 GB
EGAF00008487419 bam 1.4 GB
EGAF00008487420 bam 1.5 GB
EGAF00008487422 bam 1.3 GB
EGAF00008487423 bam 2.4 GB
EGAF00008487424 bam 3.6 GB
EGAF00008487425 bam 2.4 GB
EGAF00008487427 bam 1.6 GB
EGAF00008487432 bam 2.2 GB
EGAF00008487435 bam 1.8 GB
EGAF00008487436 bam 1.6 GB
EGAF00008487441 bam 1.6 GB
EGAF00008487443 bam 1.6 GB
EGAF00008487444 bam 1.4 GB
EGAF00008487445 bam 2.8 GB
EGAF00008487447 bam 2.3 GB
EGAF00008487471 bam 4.2 GB
EGAF00008487478 bam 1.5 GB
EGAF00008487479 bam 1.7 GB
EGAF00008487482 bam 1.1 GB
EGAF00008487485 bam 1.8 GB
EGAF00008487488 bam 1.6 GB
EGAF00008487490 bam 1.7 GB
EGAF00008487492 bam 1.7 GB
EGAF00008487496 bam 1.7 GB
EGAF00008487503 bam 3.9 GB
EGAF00008487504 bam 1.1 GB
EGAF00008487505 bam 701.2 MB
EGAF00008487506 bam 1.5 GB
EGAF00008487509 bam 1.3 GB
EGAF00008487510 bam 1.9 GB
EGAF00008487512 bam 1.7 GB
EGAF00008487516 bam 2.3 GB
EGAF00008487517 bam 1.6 GB
EGAF00008487518 bam 1.8 GB
EGAF00008487520 bam 1.5 GB
EGAF00008487521 bam 1.4 GB
EGAF00008487525 bam 4.0 GB
EGAF00008487528 bam 1.6 GB
EGAF00008487529 bam 1.7 GB
EGAF00008487532 bam 1.9 GB
EGAF00008487536 bam 2.0 GB
EGAF00008487537 bam 3.4 GB
EGAF00008487538 bam 2.6 GB
EGAF00008487539 bam 4.0 GB
EGAF00008487540 bam 1.8 GB
EGAF00008487543 bam 4.0 GB
EGAF00008487544 bam 5.6 GB
EGAF00008487545 bam 1.3 GB
EGAF00008487549 bam 4.2 GB
EGAF00008487550 bam 2.0 GB
EGAF00008487552 bam 1.5 GB
EGAF00008487553 bam 1.9 GB
EGAF00008487554 bam 3.6 GB
EGAF00008487556 bam 2.9 GB
EGAF00008487557 bam 1.7 GB
EGAF00008487558 bam 1.3 GB
EGAF00008487559 bam 2.7 GB
EGAF00008487560 bam 3.8 GB
EGAF00008487561 bam 3.4 GB
EGAF00008487563 bam 3.5 GB
EGAF00008487564 bam 2.9 GB
EGAF00008487565 bam 3.1 GB
EGAF00008487568 bam 2.4 GB
EGAF00008487569 bam 2.7 GB
EGAF00008487570 bam 1.4 GB
EGAF00008487572 bam 1.9 GB
EGAF00008487574 bam 2.6 GB
EGAF00008487575 bam 1.7 GB
EGAF00008487576 bam 2.9 GB
EGAF00008487577 bam 1.5 GB
EGAF00008487581 bam 2.1 GB
EGAF00008487582 bam 2.8 GB
EGAF00008487584 bam 633.9 MB
EGAF00008487585 bam 1.3 GB
EGAF00008487587 bam 6.7 GB
EGAF00008487589 bam 4.4 GB
EGAF00008487591 bam 684.4 MB
EGAF00008487592 bam 2.5 GB
EGAF00008487595 bam 3.6 GB
EGAF00008487597 bam 1.2 GB
EGAF00008487599 bam 1.3 GB
EGAF00008487600 bam 2.8 GB
EGAF00008487602 bam 754.0 MB
EGAF00008487603 bam 3.6 GB
EGAF00008487605 bam 1.3 GB
EGAF00008487607 bam 5.7 GB
EGAF00008487608 bam 3.5 GB
EGAF00008487610 bam 5.2 GB
EGAF00008487612 bam 4.3 GB
EGAF00008487613 bam 4.4 GB
EGAF00008487614 bam 1.8 GB
EGAF00008487615 bam 1.7 GB
EGAF00008487617 bam 1.3 GB
EGAF00008487618 bam 1.3 GB
EGAF00008487619 bam 2.1 GB
EGAF00008487620 bam 1.4 GB
EGAF00008487623 bam 1.1 GB
EGAF00008487625 bam 1.4 GB
EGAF00008487629 bam 2.1 GB
EGAF00008487630 bam 3.4 GB
EGAF00008487631 bam 3.5 GB
EGAF00008487632 bam 2.8 GB
EGAF00008487633 bam 1.6 GB
EGAF00008487634 bam 2.4 GB
EGAF00008487637 bam 2.9 GB
EGAF00008487638 bam 1.1 GB
EGAF00008487640 bam 2.0 GB
EGAF00008487641 bam 1.3 GB
EGAF00008487642 bam 1.3 GB
EGAF00008487643 bam 5.7 GB
EGAF00008487645 bam 3.4 GB
EGAF00008487646 bam 3.6 GB
EGAF00008487647 bam 3.0 GB
EGAF00008487648 bam 3.6 GB
EGAF00008487650 bam 1.9 GB
EGAF00008487651 bam 2.3 GB
EGAF00008487653 bam 1.3 GB
EGAF00008487654 bam 2.3 GB
EGAF00008487655 bam 5.3 GB
EGAF00008487656 bam 1.9 GB
EGAF00008487657 bam 4.1 GB
EGAF00008487658 bam 3.6 GB
EGAF00008487659 bam 2.9 GB
EGAF00008487660 bam 2.0 GB
EGAF00008487661 bam 4.0 GB
EGAF00008487662 bam 2.7 GB
EGAF00008487664 bam 1.9 GB
EGAF00008487667 bam 3.8 GB
EGAF00008487668 bam 864.2 MB
EGAF00008487670 bam 2.8 GB
EGAF00008487671 bam 1.9 GB
EGAF00008487672 bam 3.5 GB
EGAF00008487674 bam 4.6 GB
EGAF00008487675 bam 3.7 GB
EGAF00008487677 bam 3.6 GB
EGAF00008487679 bam 3.5 GB
EGAF00008487681 bam 779.9 MB
EGAF00008487682 bam 2.1 GB
EGAF00008487685 bam 1.4 GB
EGAF00008487688 bam 1.3 GB
EGAF00008487689 bam 2.4 GB
EGAF00008487690 bam 1.5 GB
EGAF00008487691 bam 3.9 GB
EGAF00008487692 bam 1.3 GB
EGAF00008487695 bam 825.0 MB
EGAF00008487696 bam 2.3 GB
EGAF00008487698 bam 5.0 GB
EGAF00008487703 bam 1.0 GB
EGAF00008487704 bam 3.3 GB
EGAF00008487705 bam 2.3 GB
EGAF00008487707 bam 2.0 GB
EGAF00008487709 bam 1.7 GB
EGAF00008487710 bam 4.0 GB
EGAF00008487711 bam 926.1 MB
203 Files (463.8 GB)