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Spatially resolved TME alterations in GCPM

Whole exome sequencing of 66 gastric samples and whole transcriptome sequencing of 191 gastric samples.

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National University of Singapore data access agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions by signing this Data Access Agreement. Definitions Authorised Personnel: The individuals at the User Institution to whom NUS grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: NUS and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. NUS: The National University of Singapore with its registered address at 21 Lower Kent Ridge Road, Singapore 119077. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes, which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the User Institution that may arise (whether directly or indirectly) in any way whatsoever from the User Institution’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify NUS, within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify NUS prior to any significant changes to the protocol for the Project. 14. The User Institution will notify NUS as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. NUS may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than NUS. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Singapore and shall be subject to the exclusive jurisdiction of the courts in Singapore.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000501 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008529448 cram 6.2 GB
EGAF00008532377 cram 5.1 GB
EGAF00008532379 cram 6.8 GB
EGAF00008532381 cram 6.8 GB
EGAF00008532382 cram 6.5 GB
EGAF00008532384 cram 9.3 GB
EGAF00008532404 cram 10.7 GB
EGAF00008532411 cram 4.7 GB
EGAF00008532427 cram 5.7 GB
EGAF00008532440 cram 5.4 GB
EGAF00008532445 cram 5.7 GB
EGAF00008532455 cram 9.1 GB
EGAF00008532463 cram 9.7 GB
EGAF00008532465 cram 10.0 GB
EGAF00008532483 cram 12.7 GB
EGAF00008532518 cram 9.0 GB
EGAF00008532580 cram 15.4 GB
EGAF00008532593 cram 12.0 GB
EGAF00008532658 cram 12.8 GB
EGAF50000168462 cram 5.6 GB
EGAF50000168463 cram 5.0 GB
EGAF50000168464 cram 6.8 GB
EGAF50000168465 cram 8.9 GB
EGAF50000168466 cram 9.6 GB
EGAF50000168467 cram 18.1 GB
EGAF50000168468 cram 10.3 GB
EGAF50000168469 cram 9.8 GB
EGAF50000168470 cram 9.4 GB
EGAF50000168471 cram 7.3 GB
EGAF50000168472 cram 10.3 GB
EGAF50000168473 cram 9.2 GB
EGAF50000168474 cram 10.1 GB
EGAF50000168475 cram 11.0 GB
EGAF50000168476 cram 7.3 GB
EGAF50000168477 cram 7.4 GB
EGAF50000168478 cram 11.0 GB
EGAF50000168479 cram 7.1 GB
EGAF50000168480 cram 7.5 GB
EGAF50000168481 cram 5.7 GB
EGAF50000168482 cram 5.5 GB
EGAF50000168483 cram 5.9 GB
EGAF50000168484 cram 5.7 GB
EGAF50000168485 cram 5.1 GB
EGAF50000168486 cram 5.5 GB
EGAF50000168487 cram 4.7 GB
EGAF50000168488 cram 5.4 GB
EGAF50000168489 cram 11.0 GB
EGAF50000168490 cram 11.9 GB
EGAF50000168491 cram 4.7 GB
EGAF50000168492 cram 8.0 GB
EGAF50000168493 cram 8.3 GB
EGAF50000168494 cram 8.6 GB
EGAF50000168495 cram 7.8 GB
EGAF50000168496 cram 7.6 GB
EGAF50000168497 cram 3.6 GB
EGAF50000168498 cram 4.4 GB
EGAF50000168499 cram 5.3 GB
EGAF50000168500 cram 10.7 GB
EGAF50000168501 cram 9.7 GB
EGAF50000168502 cram 5.0 GB
EGAF50000168503 cram 5.0 GB
EGAF50000168504 cram 4.8 GB
EGAF50000168505 cram 6.5 GB
EGAF50000168506 cram 5.0 GB
EGAF50000168507 cram 4.8 GB
EGAF50000168508 cram 3.5 GB
EGAF50000168509 cram 5.2 GB
EGAF50000168510 cram 5.7 GB
EGAF50000168511 cram 5.2 GB
EGAF50000168512 cram 8.3 GB
EGAF50000168513 cram 12.3 GB
EGAF50000168514 cram 6.4 GB
EGAF50000168515 cram 5.8 GB
EGAF50000168516 cram 6.6 GB
EGAF50000168517 cram 5.0 GB
EGAF50000168518 cram 8.0 GB
EGAF50000168519 cram 4.7 GB
EGAF50000168520 cram 6.8 GB
EGAF50000168521 cram 5.3 GB
EGAF50000168522 cram 7.2 GB
EGAF50000168523 cram 6.4 GB
EGAF50000168524 cram 5.9 GB
EGAF50000168525 cram 4.6 GB
EGAF50000168526 cram 5.5 GB
EGAF50000168527 cram 4.2 GB
EGAF50000168528 cram 4.9 GB
EGAF50000168529 cram 7.7 GB
EGAF50000168530 cram 4.7 GB
EGAF50000168531 cram 5.5 GB
EGAF50000168532 cram 5.7 GB
EGAF50000168533 cram 8.9 GB
EGAF50000168534 cram 5.6 GB
EGAF50000168535 cram 6.4 GB
EGAF50000168536 cram 13.4 GB
EGAF50000168537 cram 10.9 GB
EGAF50000168538 cram 16.7 GB
EGAF50000168539 cram 9.7 GB
EGAF50000168540 cram 11.0 GB
EGAF50000168541 cram 8.5 GB
EGAF50000168542 cram 9.3 GB
EGAF50000168543 cram 12.3 GB
EGAF50000168544 cram 10.2 GB
EGAF50000168545 cram 14.5 GB
EGAF50000168546 cram 8.9 GB
EGAF50000168547 cram 7.1 GB
EGAF50000168548 cram 9.8 GB
EGAF50000168549 cram 8.9 GB
EGAF50000168550 cram 10.3 GB
EGAF50000168551 cram 10.2 GB
EGAF50000168552 cram 8.7 GB
EGAF50000168553 cram 8.1 GB
EGAF50000168554 cram 10.1 GB
EGAF50000168555 cram 8.6 GB
EGAF50000168556 cram 8.0 GB
EGAF50000168557 cram 8.3 GB
EGAF50000168558 cram 9.0 GB
EGAF50000168559 cram 8.9 GB
EGAF50000168560 cram 8.5 GB
EGAF50000168561 cram 9.0 GB
EGAF50000168562 cram 10.0 GB
EGAF50000168563 cram 10.3 GB
EGAF50000168564 cram 8.2 GB
EGAF50000168565 cram 8.2 GB
EGAF50000168566 cram 8.0 GB
EGAF50000168567 cram 7.5 GB
EGAF50000168568 cram 9.0 GB
EGAF50000168569 cram 10.2 GB
EGAF50000168570 cram 9.8 GB
EGAF50000168571 cram 10.1 GB
EGAF50000168572 cram 10.2 GB
EGAF50000168573 cram 7.7 GB
EGAF50000168574 cram 7.4 GB
EGAF50000168575 cram 9.1 GB
EGAF50000168576 cram 9.0 GB
EGAF50000168577 cram 6.9 GB
EGAF50000168578 cram 8.1 GB
EGAF50000168579 cram 8.7 GB
EGAF50000168580 cram 8.0 GB
EGAF50000168581 cram 9.1 GB
EGAF50000168582 cram 7.6 GB
EGAF50000168583 cram 7.9 GB
EGAF50000168584 cram 6.9 GB
EGAF50000168585 cram 8.9 GB
EGAF50000168586 cram 7.5 GB
EGAF50000168587 cram 9.5 GB
EGAF50000168588 cram 9.3 GB
EGAF50000168589 cram 9.4 GB
EGAF50000168590 cram 9.4 GB
EGAF50000168591 cram 8.1 GB
EGAF50000168592 cram 8.7 GB
EGAF50000168593 cram 8.6 GB
EGAF50000168594 cram 8.1 GB
EGAF50000168595 cram 8.1 GB
EGAF50000168596 cram 9.5 GB
EGAF50000168597 cram 9.0 GB
EGAF50000168598 cram 10.5 GB
EGAF50000168599 cram 10.6 GB
EGAF50000168600 cram 6.6 GB
EGAF50000168601 cram 7.4 GB
EGAF50000168602 cram 9.2 GB
EGAF50000168603 cram 9.3 GB
EGAF50000168604 cram 9.0 GB
EGAF50000168605 cram 7.6 GB
EGAF50000168606 cram 7.2 GB
EGAF50000168607 cram 7.6 GB
EGAF50000168608 cram 8.0 GB
EGAF50000168609 cram 8.4 GB
EGAF50000168610 cram 7.4 GB
EGAF50000168611 cram 9.1 GB
EGAF50000168612 cram 6.9 GB
EGAF50000168613 cram 10.5 GB
EGAF50000168614 cram 9.6 GB
EGAF50000168615 cram 8.2 GB
EGAF50000168616 cram 9.2 GB
EGAF50000168617 cram 7.9 GB
EGAF50000168618 cram 9.9 GB
EGAF50000168619 cram 9.8 GB
EGAF50000168620 cram 6.9 GB
EGAF50000168621 cram 8.8 GB
EGAF50000168622 cram 6.3 GB
EGAF50000168623 cram 9.2 GB
EGAF50000168624 cram 10.1 GB
EGAF50000168625 cram 9.6 GB
EGAF50000168626 cram 7.1 GB
EGAF50000168627 cram 6.9 GB
EGAF50000168628 cram 9.6 GB
EGAF50000168629 cram 9.9 GB
EGAF50000168630 cram 6.8 GB
EGAF50000168631 cram 8.1 GB
EGAF50000168632 cram 8.8 GB
EGAF50000168633 cram 8.9 GB
EGAF50000168634 cram 9.8 GB
EGAF50000168635 cram 7.0 GB
EGAF50000168636 cram 7.5 GB
EGAF50000168637 cram 6.3 GB
EGAF50000168638 cram 8.0 GB
EGAF50000168639 cram 6.9 GB
EGAF50000168640 cram 5.9 GB
EGAF50000168641 cram 7.0 GB
EGAF50000168642 cram 9.5 GB
EGAF50000168643 cram 7.3 GB
EGAF50000168644 cram 7.3 GB
EGAF50000168645 cram 8.9 GB
EGAF50000168646 cram 7.6 GB
EGAF50000168647 cram 7.8 GB
EGAF50000168648 cram 7.0 GB
EGAF50000168649 cram 4.6 GB
EGAF50000168650 cram 5.3 GB
EGAF50000168651 cram 6.1 GB
EGAF50000168652 cram 5.2 GB
EGAF50000168653 cram 5.8 GB
EGAF50000168654 cram 9.3 GB
EGAF50000168655 cram 6.8 GB
EGAF50000168656 cram 8.7 GB
EGAF50000168657 cram 6.9 GB
EGAF50000168658 cram 4.7 GB
EGAF50000168659 cram 5.8 GB
EGAF50000168660 cram 3.9 GB
EGAF50000168661 cram 4.2 GB
EGAF50000168662 cram 5.2 GB
EGAF50000168663 cram 4.0 GB
EGAF50000168664 cram 7.6 GB
EGAF50000168665 cram 4.9 GB
EGAF50000168666 cram 5.9 GB
EGAF50000168667 cram 6.8 GB
EGAF50000168668 cram 6.1 GB
EGAF50000168669 cram 5.5 GB
EGAF50000168670 cram 4.3 GB
EGAF50000168671 cram 8.3 GB
EGAF50000168672 cram 5.8 GB
EGAF50000168673 cram 5.8 GB
EGAF50000168674 cram 5.9 GB
EGAF50000168675 cram 6.5 GB
EGAF50000168676 cram 5.7 GB
EGAF50000168677 cram 5.9 GB
EGAF50000168678 cram 3.3 GB
EGAF50000168679 cram 4.5 GB
EGAF50000168680 cram 4.9 GB
EGAF50000168681 cram 6.9 GB
EGAF50000168682 cram 9.2 GB
EGAF50000168683 cram 4.4 GB
EGAF50000168684 cram 7.2 GB
EGAF50000168685 cram 5.2 GB
EGAF50000168686 cram 14.6 GB
EGAF50000168687 cram 3.9 GB
EGAF50000168688 cram 8.7 GB
EGAF50000168689 cram 2.7 GB
EGAF50000168690 cram 3.1 GB
EGAF50000168691 cram 6.5 GB
EGAF50000168692 cram 6.5 GB
EGAF50000168693 cram 5.9 GB
EGAF50000168694 cram 6.9 GB
EGAF50000168695 cram 5.3 GB
EGAF50000168696 cram 6.2 GB
EGAF50000168697 cram 13.3 GB
EGAF50000168698 cram 4.5 GB
EGAF50000168699 cram 1.7 GB
257 Files (2.0 TB)