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scRNA-seq analysis of HGSC tumors, including immune TME, before and after NACT

Gene expression profiles of single cells from 26 tumor and ascites samples samples from 17 patients

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The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE).

The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE). See link for full description

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000607 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008437845 fastq.gz 1.5 GB
EGAF00008437846 fastq.gz 3.4 GB
EGAF00008437847 fastq.gz 4.5 GB
EGAF00008437848 fastq.gz 3.6 GB
EGAF00008437850 fastq.gz 139.8 kB
EGAF00008437851 fastq.gz 342.1 kB
EGAF00008437854 fastq.gz 6.1 GB
EGAF00008437856 fastq.gz 3.4 GB
EGAF00008437857 fastq.gz 2.5 GB
EGAF00008437858 fastq.gz 3.9 GB
EGAF00008437860 fastq.gz 132.8 kB
EGAF00008437861 fastq.gz 324.8 kB
EGAF00008437862 fastq.gz 174.8 kB
EGAF00008437863 fastq.gz 437.1 kB
EGAF00008437864 fastq.gz 2.6 GB
EGAF00008437866 fastq.gz 4.4 GB
EGAF00008437867 fastq.gz 6.9 GB
EGAF00008437868 fastq.gz 356.8 kB
EGAF00008437869 fastq.gz 6.2 GB
EGAF00008437870 fastq.gz 6.7 GB
EGAF00008437871 fastq.gz 5.9 GB
EGAF00008437873 fastq.gz 79.5 kB
EGAF00008437876 fastq.gz 1.4 GB
EGAF00008437878 fastq.gz 3.4 GB
EGAF00008437880 fastq.gz 4.7 GB
EGAF00008437881 fastq.gz 2.0 GB
EGAF00008437883 fastq.gz 4.5 GB
EGAF00008437884 fastq.gz 1.5 GB
EGAF00008437885 fastq.gz 10.5 GB
EGAF00008437887 fastq.gz 2.1 MB
EGAF00008437888 fastq.gz 11.0 GB
EGAF00008437891 fastq.gz 178.9 kB
EGAF00008437892 fastq.gz 751.8 kB
EGAF00008437894 fastq.gz 2.6 GB
EGAF00008437895 fastq.gz 6.8 GB
EGAF00008437896 fastq.gz 13.2 GB
EGAF00008437897 fastq.gz 743.3 kB
EGAF00008437898 fastq.gz 2.1 MB
EGAF00008437900 fastq.gz 2.7 GB
EGAF00008437901 fastq.gz 396.4 kB
EGAF00008437905 fastq.gz 378.4 kB
EGAF00008437906 fastq.gz 2.7 GB
EGAF00008437909 fastq.gz 3.8 GB
EGAF00008437911 fastq.gz 4.8 GB
EGAF00008437913 fastq.gz 4.8 GB
EGAF00008437914 fastq.gz 155.8 kB
EGAF00008438012 fastq.gz 6.6 GB
EGAF00008438013 fastq.gz 8.2 GB
EGAF00008438015 fastq.gz 16.3 GB
EGAF00008438017 fastq.gz 1.6 GB
EGAF00008438018 fastq.gz 1.6 GB
EGAF00008438020 fastq.gz 2.0 GB
EGAF00008438022 fastq.gz 2.6 GB
EGAF00008438023 fastq.gz 3.0 GB
EGAF00008438026 fastq.gz 1.4 GB
EGAF00008438027 fastq.gz 1.5 GB
EGAF00008438028 fastq.gz 153.5 kB
EGAF00008438031 fastq.gz 151.7 kB
EGAF00008438032 fastq.gz 3.4 GB
EGAF00008438033 fastq.gz 12.8 GB
EGAF00008438034 fastq.gz 6.6 GB
EGAF00008438035 fastq.gz 16.6 GB
EGAF00008438037 fastq.gz 4.0 GB
EGAF00008438038 fastq.gz 2.5 GB
EGAF00008438040 fastq.gz 2.1 GB
EGAF00008438042 fastq.gz 6.8 GB
EGAF00008438045 fastq.gz 3.5 GB
EGAF00008438046 fastq.gz 7.4 GB
EGAF00008438047 fastq.gz 8.2 GB
EGAF00008438048 fastq.gz 746.8 kB
EGAF00008438051 fastq.gz 1.4 GB
EGAF00008438054 fastq.gz 6.3 GB
EGAF00008438055 fastq.gz 18.3 GB
EGAF00008438056 fastq.gz 20.6 GB
EGAF00008438058 fastq.gz 3.8 GB
EGAF00008438060 fastq.gz 3.0 GB
EGAF00008438064 fastq.gz 2.5 GB
EGAF00008438065 fastq.gz 16.4 GB
EGAF00008438066 fastq.gz 144.4 kB
EGAF00008438069 fastq.gz 5.4 GB
EGAF00008438070 fastq.gz 1.4 GB
EGAF00008438072 fastq.gz 8.2 GB
EGAF00008438074 fastq.gz 2.1 MB
EGAF00008438075 fastq.gz 2.2 GB
EGAF00008438077 fastq.gz 18.6 GB
EGAF00008438078 fastq.gz 2.4 GB
EGAF00008438081 fastq.gz 387.4 kB
EGAF00008438082 fastq.gz 3.6 GB
EGAF00008438087 fastq.gz 13.0 GB
EGAF00008438089 fastq.gz 1.4 GB
EGAF00008438091 fastq.gz 3.4 GB
EGAF00008438093 fastq.gz 5.7 GB
EGAF00008438094 fastq.gz 3.3 GB
EGAF00008438096 fastq.gz 7.4 GB
EGAF00008438098 fastq.gz 7.4 GB
EGAF00008438099 fastq.gz 5.6 GB
EGAF00008438101 fastq.gz 6.0 GB
EGAF00008438103 fastq.gz 5.7 GB
EGAF00008438104 fastq.gz 2.4 GB
EGAF00008438106 fastq.gz 10.4 GB
EGAF00008438109 fastq.gz 7.4 GB
EGAF00008439778 fastq.gz 3.9 GB
EGAF00008473045 fastq.gz 162.5 kB
EGAF00008473046 fastq.gz 418.1 kB
EGAF00008473048 fastq.gz 2.0 GB
EGAF00008473049 fastq.gz 2.0 GB
EGAF00008473050 fastq.gz 2.8 GB
EGAF00008473051 fastq.gz 5.0 GB
EGAF00008473052 fastq.gz 2.9 GB
EGAF00008473053 fastq.gz 6.5 GB
EGAF00008473054 fastq.gz 2.9 GB
EGAF00008473055 fastq.gz 6.6 GB
EGAF00008473056 fastq.gz 3.0 GB
EGAF00008473057 fastq.gz 5.0 GB
EGAF00008473059 fastq.gz 9.0 GB
EGAF00008473060 fastq.gz 2.8 GB
EGAF00008473061 fastq.gz 6.5 GB
EGAF00008473062 fastq.gz 6.7 GB
EGAF00008476850 fastq.gz 6.6 GB
EGAF00008478891 fastq.gz 20.3 GB
120 Files (548.3 GB)