About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNA-seq analysis of HGSC tumors, including immune TME, before and after NACT

Gene expression profiles of single cells from 26 tumor and ascites samples samples from 17 patients

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The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE).

The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE). See link for full description

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000607 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008437845 fastq.gz 1.5 GB Report
EGAF00008437846 fastq.gz 3.4 GB Report
EGAF00008437847 fastq.gz 4.5 GB Report
EGAF00008437848 fastq.gz 3.6 GB Report
EGAF00008437850 fastq.gz 139.8 kB Report
EGAF00008437851 fastq.gz 342.1 kB Report
EGAF00008437854 fastq.gz 6.1 GB Report
EGAF00008437856 fastq.gz 3.4 GB Report
EGAF00008437857 fastq.gz 2.5 GB Report
EGAF00008437858 fastq.gz 3.9 GB Report
EGAF00008437860 fastq.gz 132.8 kB Report
EGAF00008437861 fastq.gz 324.8 kB Report
EGAF00008437862 fastq.gz 174.8 kB Report
EGAF00008437863 fastq.gz 437.1 kB Report
EGAF00008437864 fastq.gz 2.6 GB Report
EGAF00008437866 fastq.gz 4.4 GB Report
EGAF00008437867 fastq.gz 6.9 GB Report
EGAF00008437868 fastq.gz 356.8 kB Report
EGAF00008437869 fastq.gz 6.2 GB Report
EGAF00008437870 fastq.gz 6.7 GB Report
EGAF00008437871 fastq.gz 5.9 GB Report
EGAF00008437873 fastq.gz 79.5 kB Report
EGAF00008437876 fastq.gz 1.4 GB Report
EGAF00008437878 fastq.gz 3.4 GB Report
EGAF00008437880 fastq.gz 4.7 GB Report
EGAF00008437881 fastq.gz 2.0 GB Report
EGAF00008437883 fastq.gz 4.5 GB Report
EGAF00008437884 fastq.gz 1.5 GB Report
EGAF00008437885 fastq.gz 10.5 GB Report
EGAF00008437887 fastq.gz 2.1 MB Report
EGAF00008437888 fastq.gz 11.0 GB Report
EGAF00008437891 fastq.gz 178.9 kB Report
EGAF00008437892 fastq.gz 751.8 kB Report
EGAF00008437894 fastq.gz 2.6 GB Report
EGAF00008437895 fastq.gz 6.8 GB Report
EGAF00008437896 fastq.gz 13.2 GB Report
EGAF00008437897 fastq.gz 743.3 kB Report
EGAF00008437898 fastq.gz 2.1 MB Report
EGAF00008437900 fastq.gz 2.7 GB Report
EGAF00008437901 fastq.gz 396.4 kB Report
EGAF00008437905 fastq.gz 378.4 kB Report
EGAF00008437906 fastq.gz 2.7 GB Report
EGAF00008437909 fastq.gz 3.8 GB Report
EGAF00008437911 fastq.gz 4.8 GB Report
EGAF00008437913 fastq.gz 4.8 GB Report
EGAF00008437914 fastq.gz 155.8 kB Report
EGAF00008438012 fastq.gz 6.6 GB Report
EGAF00008438013 fastq.gz 8.2 GB Report
EGAF00008438015 fastq.gz 16.3 GB Report
EGAF00008438017 fastq.gz 1.6 GB Report
EGAF00008438018 fastq.gz 1.6 GB Report
EGAF00008438020 fastq.gz 2.0 GB Report
EGAF00008438022 fastq.gz 2.6 GB Report
EGAF00008438023 fastq.gz 3.0 GB Report
EGAF00008438026 fastq.gz 1.4 GB Report
EGAF00008438027 fastq.gz 1.5 GB Report
EGAF00008438028 fastq.gz 153.5 kB Report
EGAF00008438031 fastq.gz 151.7 kB Report
EGAF00008438032 fastq.gz 3.4 GB Report
EGAF00008438033 fastq.gz 12.8 GB Report
EGAF00008438034 fastq.gz 6.6 GB Report
EGAF00008438035 fastq.gz 16.6 GB Report
EGAF00008438037 fastq.gz 4.0 GB Report
EGAF00008438038 fastq.gz 2.5 GB Report
EGAF00008438040 fastq.gz 2.1 GB Report
EGAF00008438042 fastq.gz 6.8 GB Report
EGAF00008438045 fastq.gz 3.5 GB Report
EGAF00008438046 fastq.gz 7.4 GB Report
EGAF00008438047 fastq.gz 8.2 GB Report
EGAF00008438048 fastq.gz 746.8 kB Report
EGAF00008438051 fastq.gz 1.4 GB Report
EGAF00008438054 fastq.gz 6.3 GB Report
EGAF00008438055 fastq.gz 18.3 GB Report
EGAF00008438056 fastq.gz 20.6 GB Report
EGAF00008438058 fastq.gz 3.8 GB Report
EGAF00008438060 fastq.gz 3.0 GB Report
EGAF00008438064 fastq.gz 2.5 GB Report
EGAF00008438065 fastq.gz 16.4 GB Report
EGAF00008438066 fastq.gz 144.4 kB Report
EGAF00008438069 fastq.gz 5.4 GB Report
EGAF00008438070 fastq.gz 1.4 GB Report
EGAF00008438072 fastq.gz 8.2 GB Report
EGAF00008438074 fastq.gz 2.1 MB Report
EGAF00008438075 fastq.gz 2.2 GB Report
EGAF00008438077 fastq.gz 18.6 GB Report
EGAF00008438078 fastq.gz 2.4 GB Report
EGAF00008438081 fastq.gz 387.4 kB Report
EGAF00008438082 fastq.gz 3.6 GB Report
EGAF00008438087 fastq.gz 13.0 GB Report
EGAF00008438089 fastq.gz 1.4 GB Report
EGAF00008438091 fastq.gz 3.4 GB Report
EGAF00008438093 fastq.gz 5.7 GB Report
EGAF00008438094 fastq.gz 3.3 GB Report
EGAF00008438096 fastq.gz 7.4 GB Report
EGAF00008438098 fastq.gz 7.4 GB Report
EGAF00008438099 fastq.gz 5.6 GB Report
EGAF00008438101 fastq.gz 6.0 GB Report
EGAF00008438103 fastq.gz 5.7 GB Report
EGAF00008438104 fastq.gz 2.4 GB Report
EGAF00008438106 fastq.gz 10.4 GB Report
EGAF00008438109 fastq.gz 7.4 GB Report
EGAF00008439778 fastq.gz 3.9 GB Report
EGAF00008473045 fastq.gz 162.5 kB Report
EGAF00008473046 fastq.gz 418.1 kB Report
EGAF00008473048 fastq.gz 2.0 GB Report
EGAF00008473049 fastq.gz 2.0 GB Report
EGAF00008473050 fastq.gz 2.8 GB Report
EGAF00008473051 fastq.gz 5.0 GB Report
EGAF00008473052 fastq.gz 2.9 GB Report
EGAF00008473053 fastq.gz 6.5 GB Report
EGAF00008473054 fastq.gz 2.9 GB Report
EGAF00008473055 fastq.gz 6.6 GB Report
EGAF00008473056 fastq.gz 3.0 GB Report
EGAF00008473057 fastq.gz 5.0 GB Report
EGAF00008473059 fastq.gz 9.0 GB Report
EGAF00008473060 fastq.gz 2.8 GB Report
EGAF00008473061 fastq.gz 6.5 GB Report
EGAF00008473062 fastq.gz 6.7 GB Report
EGAF00008476850 fastq.gz 6.6 GB Report
EGAF00008478891 fastq.gz 20.3 GB Report
120 Files (548.3 GB)