University of Helsinki and Turku University Hospital Data Access Committee

Contact Information

Sampsa Hautaniemi
sysbio-dac@helsinki.fi

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This DAC controls 25 datasets

Dataset ID	Description	Technology	Samples
EGAD00001006456	RNA sequencing data of over 200 HGSOC samples at diagnosis, after chemotherapy and during progression.	unspecified	212
EGAD00001008753	HGSOC patient-derived organoids and their tissue of origin	Illumina HiSeq 4000 Illumina NovaSeq 6000	13
EGAD00001009330	Sequencing data for three HGSC patients with patient derived cell lines. WES data for two patient derived cell line samples and matched blood control samples. Fresh frozen tumor samples of two patients with WES or WGS sequencing data.	HiSeq X Ten Illumina HiSeq 2000	9
EGAD00001009738	Whole genome sequencing data of 5 High-grade serous carcinoma (HGSC) patients (6 samples) sequenced with BGI.	unspecified	6
EGAD00001009791	Whole genome sequencing data of 8 High-grade serous carcinoma (HGSC) patients (20 samples) sequenced with HiSeq X Ten.	HiSeq X Ten	20
EGAD00001009888	Whole genome sequencing data of 9 high-grade serous carcinoma (HGSC) patients (55 samples) sequenced with HiSeq X Ten.	HiSeq X Ten	55
EGAD00001010019	Sequencing data of 10 high-grade serous carcinoma (HGSC) patients (58 samples including blood derived normal samples as germline controls, fresh frozen tissue samples as tissue controls and organoids) sequenced with HiSeq X Ten / BGISEQ-500 / MGISEQ-2000.	HiSeq X Ten unspecified	58
EGAD00001010029	Whole genome sequencing data of 19 high-grade serous carcinoma (HGSC) patients (47 samples) sequenced with HiSeq X Ten.	HiSeq X Ten	78
EGAD00001010066	Whole genome sequencing data of 7 high-grade serous carcinoma (HGSC) patients (32 samples) sequenced with HiSeq X Ten.	HiSeq X Ten	-
EGAD00001010202	Whole genome sequencing data of 31 high-grade serous carcinoma (HGSC) patients (101 samples) sequenced with HiSeq X Ten and BGISEQ-500	HiSeq X Ten unspecified	90
EGAD00001010845	Whole genome sequencing data of 36 high-grade serous carcinoma (HGSC) patients (89 samples) sequenced with HiSeq X Ten.	unspecified	77
EGAD00001011086	Whole genome sequencing data of 21 high-grade serous carcinoma (HGSC) patients (59 samples) sequenced with MGISEQ-2000.	unspecified	59
EGAD00001011304	Whole genome sequencing data of 26 high-grade serous carcinoma (HGSC) patients (87 samples) sequenced with MGISEQ-2000 and HiSeq X Ten.	HiSeq X Ten unspecified	84
EGAD00001011353	Whole genome sequencing data of 6 high-grade serous carcinoma (HGSC) patients (11 samples) sequenced with MGISEQ-2000	unspecified	11
EGAD00001011368	Whole genome sequencing data of 35 high-grade serous carcinoma (HGSC) patients (112 samples) sequenced with Illumina Novoseq 6000	Illumina NovaSeq 6000	112
EGAD50000000177	Whole genome sequencing data of 19 high-grade serous carcinoma (HGSC) patients (48 samples) sequenced with MGISEQ-2000	unspecified	48
EGAD50000000211	Whole genome sequencing data of 25 high-grade serous carcinoma (HGSC) patients (65 samples) sequenced with Illumina Novoseq 6000	Illumina NovaSeq 6000	65
EGAD50000000275	Whole genome sequencing data of 56 high-grade serous carcinoma (HGSC) patients (208 samples) sequenced with Novoseq 6000	Illumina NovaSeq 6000	208
EGAD50000000313	The dataset contains whole genome sequencing data of 23 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 89 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.	Illumina NovaSeq 6000	89
EGAD50000000441	The dataset contains whole genome sequencing data of 17 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 46 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.	Illumina NovaSeq 6000	46
EGAD50000000442	The dataset contains whole genome sequencing data of 32 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 82 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.	Illumina NovaSeq 6000	82
EGAD50000000507	The dataset contains whole genome sequencing data of 42 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 100 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.	Illumina NovaSeq 6000	100
EGAD50000000526	The dataset contains whole genome sequencing data of 8 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 16 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.	Illumina NovaSeq 6000	16
EGAD50000000777	The dataset contains whole genome sequencing data of 58 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 144 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.	Illumina NovaSeq 6000	144
EGAD50000000862	Gene expression profiles of single cells from 26 tumor and ascites samples samples from 17 patients	Illumina NovaSeq 6000	26