About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Whole genome sequencing of neuroendocrine tumors of the small intestine

This dataset contains whole genome sequences for 13 patients with neuroendocrine (unique/multiple) tumor(s) of the small intestine. There are in total 25 tumor and 12 matched normal genomes. Libraries were prepared using a Illumina DNA PCR Free kit following the manufacturer’s recommendations and sequencing was performed on Illumina Novaseq6000 machine with a 2x151bp paired-end fashion. It contains data for : - 1 patient with 4 tumors and 1 matched normal - 1 patient with 3 tumors and 1 matched normal - 1 patient with 2 tumors, 1 liver metastasis and 1 matched normal - 2 patients with 1 tumor, 1 mesenteric nodule and 1 matched normal - 7 patients with 1 tumor and 1 matched normal - 1 patient with 3 tumors and 1 mesenteric nodule

Request Access

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

ModifiersPlease provide details project synopsis for review by ethical / GDPR / Scientific Committee

DUO:0000022
version: 2021-02-23

geographical restriction

This data use modifier indicates that use is limited to within a specific geographic region.

ModifiersRestriction of use within countries enforcing a strict Patient Data / Personal Data Protection Regulation such as EU GDPR or EU approved countries

DUO:0000024
version: 2021-02-23

publication moratorium

This data use modifier indicates that requestor agrees not to publish results of studies until a specific date.

Modifiersall publications of project results involving direct or indirect use of the results must acknowledge the contribution support of : "Centre Leon Berard - CLB - Comprehensive Cancer Center, Lyon France" "Cancer Research Center of Lyon - CRCL - U1052 - UMR5286, Lyon France"

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

Modifiers2 years maximum Exceptions possible in specific cases if approved by ethical committee

DUO:0000029
version: 2021-02-23

return to database or resource

This data use modifier indicates that the requestor must return derived/enriched data to the database/resource.

ModifiersUser shall provide a short summary report of its results to the dataset supplier for patient transparency purpose

DUO:0000044
version: 2021-02-23

population origins or ancestry research prohibited

This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

Non commercial research only - GDPR compliant

Non Commercial Use only Please provide details project synopsis for review by ethical / GDPR / Scientific Committee - Prefered projects : Cancers, Digestive Diseases, Rare Diseases Restriction of use within countries enforcing a strict Patient Data / Personal Data Protection Regulation such as EU GDPR or EU approved countries 2 years maximum use - Exceptions possible in specific cases if approved by ethical committee All publications of project results involving direct or indirect use of the results must acknowledge the contribution support of : "Centre Leon Berard - CLB - Comprehensive Cancer Center, Lyon France" "Cancer Research Center of Lyon - CRCL - U1052 - UMR5286, Lyon France" User shall provide a short summary report of its results to the dataset supplier for patient transparency purpose Population origins or ancestry research prohibited

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000642 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000215759 fastq.gz 7.8 GB Report
EGAF50000215794 fastq.gz 7.2 GB Report
EGAF50000215795 fastq.gz 7.3 GB Report
EGAF50000215796 fastq.gz 7.2 GB Report
EGAF50000215797 fastq.gz 7.4 GB Report
EGAF50000215798 fastq.gz 6.1 GB Report
EGAF50000215799 fastq.gz 6.5 GB Report
EGAF50000215800 fastq.gz 8.9 GB Report
EGAF50000215801 fastq.gz 6.9 GB Report
EGAF50000215802 fastq.gz 7.3 GB Report
EGAF50000215803 fastq.gz 13.7 GB Report
EGAF50000215804 fastq.gz 14.2 GB Report
EGAF50000215805 fastq.gz 8.0 GB Report
EGAF50000215806 fastq.gz 8.4 GB Report
EGAF50000215807 fastq.gz 6.9 GB Report
EGAF50000215808 fastq.gz 11.0 GB Report
EGAF50000215809 fastq.gz 10.6 GB Report
EGAF50000215810 fastq.gz 7.3 GB Report
EGAF50000215811 fastq.gz 8.7 GB Report
EGAF50000215812 fastq.gz 11.0 GB Report
EGAF50000215813 fastq.gz 14.0 GB Report
EGAF50000215814 fastq.gz 14.4 GB Report
EGAF50000215815 fastq.gz 13.8 GB Report
EGAF50000215816 fastq.gz 14.3 GB Report
EGAF50000215817 fastq.gz 8.6 GB Report
EGAF50000215818 fastq.gz 8.9 GB Report
EGAF50000215819 fastq.gz 8.6 GB Report
EGAF50000215820 fastq.gz 8.7 GB Report
EGAF50000215821 fastq.gz 9.0 GB Report
EGAF50000215822 fastq.gz 7.0 GB Report
EGAF50000215823 fastq.gz 7.2 GB Report
EGAF50000215824 fastq.gz 8.8 GB Report
EGAF50000215825 fastq.gz 8.0 GB Report
EGAF50000215826 fastq.gz 8.2 GB Report
EGAF50000215827 fastq.gz 8.4 GB Report
EGAF50000215828 fastq.gz 8.6 GB Report
EGAF50000215829 fastq.gz 10.9 GB Report
EGAF50000215830 fastq.gz 11.2 GB Report
EGAF50000215831 fastq.gz 11.0 GB Report
EGAF50000215832 fastq.gz 9.9 GB Report
EGAF50000215833 fastq.gz 10.2 GB Report
EGAF50000215834 fastq.gz 7.7 GB Report
EGAF50000215835 fastq.gz 9.2 GB Report
EGAF50000215836 fastq.gz 8.8 GB Report
EGAF50000215837 fastq.gz 9.1 GB Report
EGAF50000215838 fastq.gz 8.9 GB Report
EGAF50000215839 fastq.gz 8.6 GB Report
EGAF50000215840 fastq.gz 8.9 GB Report
EGAF50000215841 fastq.gz 10.4 GB Report
EGAF50000215842 fastq.gz 10.9 GB Report
EGAF50000215843 fastq.gz 11.0 GB Report
EGAF50000215844 fastq.gz 8.8 GB Report
EGAF50000215845 fastq.gz 9.0 GB Report
EGAF50000215846 fastq.gz 8.9 GB Report
EGAF50000215847 fastq.gz 9.1 GB Report
EGAF50000215848 fastq.gz 8.7 GB Report
EGAF50000215849 fastq.gz 8.9 GB Report
EGAF50000215850 fastq.gz 8.6 GB Report
EGAF50000215851 fastq.gz 8.4 GB Report
EGAF50000215852 fastq.gz 9.2 GB Report
EGAF50000215853 fastq.gz 9.0 GB Report
EGAF50000215854 fastq.gz 8.3 GB Report
EGAF50000215855 fastq.gz 7.6 GB Report
EGAF50000215856 fastq.gz 7.4 GB Report
EGAF50000215894 fastq.gz 8.0 GB Report
EGAF50000215897 fastq.gz 8.0 GB Report
EGAF50000215898 fastq.gz 8.1 GB Report
EGAF50000215899 fastq.gz 8.4 GB Report
EGAF50000215900 fastq.gz 8.1 GB Report
EGAF50000215901 fastq.gz 8.4 GB Report
EGAF50000215902 fastq.gz 8.1 GB Report
EGAF50000215903 fastq.gz 8.2 GB Report
EGAF50000215904 fastq.gz 8.5 GB Report
EGAF50000215905 fastq.gz 8.2 GB Report
EGAF50000215906 fastq.gz 8.1 GB Report
EGAF50000215907 fastq.gz 10.8 GB Report
EGAF50000215908 fastq.gz 10.5 GB Report
EGAF50000215909 fastq.gz 6.1 GB Report
EGAF50000215910 fastq.gz 11.0 GB Report
EGAF50000215913 fastq.gz 8.6 GB Report
EGAF50000215915 fastq.gz 7.3 GB Report
EGAF50000215921 fastq.gz 6.9 GB Report
EGAF50000215922 fastq.gz 7.4 GB Report
EGAF50000215923 fastq.gz 8.9 GB Report
EGAF50000215924 fastq.gz 10.4 GB Report
EGAF50000215925 fastq.gz 6.5 GB Report
EGAF50000215926 fastq.gz 6.2 GB Report
EGAF50000215927 fastq.gz 8.7 GB Report
EGAF50000215928 fastq.gz 6.9 GB Report
EGAF50000215929 fastq.gz 7.1 GB Report
EGAF50000215930 fastq.gz 7.2 GB Report
EGAF50000215931 fastq.gz 7.2 GB Report
EGAF50000215932 fastq.gz 8.5 GB Report
EGAF50000215933 fastq.gz 11.4 GB Report
EGAF50000215934 fastq.gz 11.0 GB Report
EGAF50000215935 fastq.gz 8.1 GB Report
EGAF50000215936 fastq.gz 8.0 GB Report
EGAF50000215937 fastq.gz 8.2 GB Report
EGAF50000215938 fastq.gz 7.4 GB Report
EGAF50000215939 fastq.gz 8.2 GB Report
EGAF50000215940 fastq.gz 8.3 GB Report
EGAF50000215941 fastq.gz 8.6 GB Report
EGAF50000215942 fastq.gz 7.9 GB Report
EGAF50000215943 fastq.gz 8.2 GB Report
EGAF50000215944 fastq.gz 7.4 GB Report
EGAF50000215945 fastq.gz 7.7 GB Report
EGAF50000215990 fastq.gz 7.7 GB Report
EGAF50000215991 fastq.gz 7.9 GB Report
EGAF50000215992 fastq.gz 9.0 GB Report
EGAF50000215993 fastq.gz 9.3 GB Report
EGAF50000216004 fastq.gz 9.0 GB Report
EGAF50000216005 fastq.gz 9.0 GB Report
EGAF50000216006 fastq.gz 8.8 GB Report
EGAF50000216011 fastq.gz 9.5 GB Report
EGAF50000216012 fastq.gz 9.9 GB Report
EGAF50000216013 fastq.gz 9.7 GB Report
EGAF50000216014 fastq.gz 10.0 GB Report
EGAF50000216015 fastq.gz 9.8 GB Report
EGAF50000216055 fastq.gz 10.8 GB Report
EGAF50000216056 fastq.gz 9.1 GB Report
EGAF50000216057 fastq.gz 8.7 GB Report
EGAF50000216060 fastq.gz 8.3 GB Report
EGAF50000216061 fastq.gz 8.1 GB Report
EGAF50000216062 fastq.gz 8.3 GB Report
EGAF50000216063 fastq.gz 8.9 GB Report
EGAF50000216064 fastq.gz 6.7 GB Report
EGAF50000216065 fastq.gz 6.8 GB Report
EGAF50000216066 fastq.gz 6.7 GB Report
EGAF50000216067 fastq.gz 6.8 GB Report
EGAF50000216068 fastq.gz 8.2 GB Report
EGAF50000216069 fastq.gz 8.0 GB Report
EGAF50000216070 fastq.gz 7.9 GB Report
EGAF50000216071 fastq.gz 7.9 GB Report
EGAF50000216072 fastq.gz 8.8 GB Report
EGAF50000216073 fastq.gz 8.7 GB Report
EGAF50000216074 fastq.gz 9.2 GB Report
EGAF50000216075 fastq.gz 8.8 GB Report
EGAF50000216076 fastq.gz 9.2 GB Report
EGAF50000216077 fastq.gz 9.2 GB Report
EGAF50000216078 fastq.gz 8.9 GB Report
EGAF50000216079 fastq.gz 10.7 GB Report
EGAF50000216114 fastq.gz 7.6 GB Report
EGAF50000216115 fastq.gz 7.3 GB Report
EGAF50000216116 fastq.gz 8.1 GB Report
EGAF50000216117 fastq.gz 8.3 GB Report
EGAF50000216118 fastq.gz 7.2 GB Report
EGAF50000216119 fastq.gz 7.5 GB Report
EGAF50000216120 fastq.gz 7.0 GB Report
EGAF50000216121 fastq.gz 7.0 GB Report
EGAF50000216122 fastq.gz 7.3 GB Report
EGAF50000216123 fastq.gz 13.5 GB Report
EGAF50000216124 fastq.gz 10.1 GB Report
EGAF50000216125 fastq.gz 6.8 GB Report
EGAF50000216126 fastq.gz 6.9 GB Report
EGAF50000216127 fastq.gz 9.2 GB Report
EGAF50000216128 fastq.gz 8.5 GB Report
EGAF50000216129 fastq.gz 8.9 GB Report
EGAF50000216130 fastq.gz 8.6 GB Report
EGAF50000216131 fastq.gz 8.9 GB Report
EGAF50000216132 fastq.gz 8.6 GB Report
EGAF50000216133 fastq.gz 9.0 GB Report
EGAF50000216134 fastq.gz 10.7 GB Report
EGAF50000216135 fastq.gz 10.6 GB Report
EGAF50000216136 fastq.gz 10.9 GB Report
EGAF50000216137 fastq.gz 11.1 GB Report
EGAF50000216251 fastq.gz 10.9 GB Report
EGAF50000216252 fastq.gz 10.7 GB Report
EGAF50000216253 fastq.gz 11.0 GB Report
EGAF50000216254 fastq.gz 11.2 GB Report
EGAF50000216255 fastq.gz 7.2 GB Report
EGAF50000216256 fastq.gz 8.5 GB Report
EGAF50000216257 fastq.gz 8.1 GB Report
EGAF50000216258 fastq.gz 8.5 GB Report
EGAF50000216259 fastq.gz 8.1 GB Report
EGAF50000216260 fastq.gz 8.4 GB Report
EGAF50000216261 fastq.gz 8.6 GB Report
EGAF50000216262 fastq.gz 8.8 GB Report
EGAF50000216263 fastq.gz 10.5 GB Report
EGAF50000216264 fastq.gz 10.9 GB Report
EGAF50000216265 fastq.gz 10.5 GB Report
EGAF50000216266 fastq.gz 10.9 GB Report
EGAF50000216267 fastq.gz 10.6 GB Report
EGAF50000216268 fastq.gz 6.9 GB Report
EGAF50000216269 fastq.gz 8.9 GB Report
EGAF50000216270 fastq.gz 8.6 GB Report
EGAF50000216271 fastq.gz 8.8 GB Report
EGAF50000216272 fastq.gz 8.7 GB Report
EGAF50000216273 fastq.gz 8.9 GB Report
EGAF50000216274 fastq.gz 8.4 GB Report
EGAF50000216275 fastq.gz 8.5 GB Report
EGAF50000216276 fastq.gz 8.7 GB Report
EGAF50000216277 fastq.gz 8.7 GB Report
EGAF50000216292 fastq.gz 6.9 GB Report
EGAF50000216293 fastq.gz 7.1 GB Report
EGAF50000216294 fastq.gz 8.9 GB Report
EGAF50000216295 fastq.gz 7.2 GB Report
EGAF50000216296 fastq.gz 7.1 GB Report
EGAF50000216297 fastq.gz 7.9 GB Report
EGAF50000216298 fastq.gz 8.1 GB Report
EGAF50000216316 fastq.gz 9.1 GB Report
EGAF50000216317 fastq.gz 9.0 GB Report
EGAF50000216318 fastq.gz 9.3 GB Report
EGAF50000216319 fastq.gz 8.1 GB Report
EGAF50000216320 fastq.gz 6.0 GB Report
EGAF50000216321 fastq.gz 5.8 GB Report
EGAF50000216322 fastq.gz 7.6 GB Report
EGAF50000216323 fastq.gz 7.3 GB Report
EGAF50000216326 fastq.gz 7.3 GB Report
EGAF50000216327 fastq.gz 7.5 GB Report
EGAF50000216328 fastq.gz 7.6 GB Report
EGAF50000216329 fastq.gz 9.0 GB Report
EGAF50000216330 fastq.gz 6.0 GB Report
EGAF50000216331 fastq.gz 5.8 GB Report
EGAF50000216332 fastq.gz 5.8 GB Report
EGAF50000216333 fastq.gz 7.8 GB Report
EGAF50000216334 fastq.gz 8.2 GB Report
EGAF50000216335 fastq.gz 5.9 GB Report
EGAF50000216336 fastq.gz 7.6 GB Report
EGAF50000216337 fastq.gz 7.6 GB Report
EGAF50000216338 fastq.gz 9.1 GB Report
EGAF50000216339 fastq.gz 10.9 GB Report
EGAF50000216357 fastq.gz 7.9 GB Report
EGAF50000216358 fastq.gz 7.8 GB Report
EGAF50000216359 fastq.gz 7.9 GB Report
EGAF50000216360 fastq.gz 8.1 GB Report
EGAF50000216361 fastq.gz 8.0 GB Report
EGAF50000216362 fastq.gz 6.9 GB Report
EGAF50000216363 fastq.gz 6.8 GB Report
EGAF50000216380 fastq.gz 7.7 GB Report
EGAF50000216381 fastq.gz 8.0 GB Report
EGAF50000216382 fastq.gz 7.7 GB Report
EGAF50000216383 fastq.gz 7.9 GB Report
EGAF50000216384 fastq.gz 7.7 GB Report
EGAF50000216385 fastq.gz 7.8 GB Report
EGAF50000216386 fastq.gz 8.6 GB Report
EGAF50000216387 fastq.gz 8.4 GB Report
EGAF50000216388 fastq.gz 8.7 GB Report
EGAF50000216389 fastq.gz 7.4 GB Report
EGAF50000216390 fastq.gz 7.9 GB Report
EGAF50000216391 fastq.gz 8.2 GB Report
EGAF50000216392 fastq.gz 8.3 GB Report
EGAF50000216393 fastq.gz 10.6 GB Report
EGAF50000216394 fastq.gz 11.1 GB Report
EGAF50000216395 fastq.gz 6.9 GB Report
EGAF50000216396 fastq.gz 7.1 GB Report
EGAF50000216397 fastq.gz 7.1 GB Report
EGAF50000216398 fastq.gz 8.6 GB Report
EGAF50000216399 fastq.gz 8.8 GB Report
EGAF50000216400 fastq.gz 8.9 GB Report
EGAF50000216401 fastq.gz 8.6 GB Report
EGAF50000216402 fastq.gz 7.2 GB Report
EGAF50000216403 fastq.gz 14.1 GB Report
EGAF50000216404 fastq.gz 8.9 GB Report
EGAF50000216405 fastq.gz 8.7 GB Report
EGAF50000216406 fastq.gz 8.9 GB Report
EGAF50000216407 fastq.gz 8.8 GB Report
EGAF50000216408 fastq.gz 8.7 GB Report
EGAF50000216409 fastq.gz 9.0 GB Report
EGAF50000216410 fastq.gz 9.1 GB Report
EGAF50000216411 fastq.gz 8.8 GB Report
EGAF50000216412 fastq.gz 6.0 GB Report
EGAF50000216413 fastq.gz 6.0 GB Report
EGAF50000216414 fastq.gz 8.3 GB Report
EGAF50000216415 fastq.gz 8.5 GB Report
EGAF50000216416 fastq.gz 8.6 GB Report
EGAF50000216417 fastq.gz 11.5 GB Report
EGAF50000216418 fastq.gz 11.1 GB Report
EGAF50000216419 fastq.gz 11.4 GB Report
EGAF50000216420 fastq.gz 8.1 GB Report
EGAF50000216421 fastq.gz 8.3 GB Report
EGAF50000216422 fastq.gz 9.1 GB Report
EGAF50000216423 fastq.gz 8.7 GB Report
EGAF50000216424 fastq.gz 9.1 GB Report
EGAF50000216425 fastq.gz 10.6 GB Report
EGAF50000216426 fastq.gz 10.9 GB Report
EGAF50000216437 fastq.gz 8.3 GB Report
EGAF50000216438 fastq.gz 8.2 GB Report
EGAF50000216439 fastq.gz 8.5 GB Report
EGAF50000216440 fastq.gz 11.0 GB Report
EGAF50000216441 fastq.gz 10.5 GB Report
EGAF50000216442 fastq.gz 6.5 GB Report
EGAF50000216443 fastq.gz 7.2 GB Report
EGAF50000216444 fastq.gz 7.1 GB Report
EGAF50000216445 fastq.gz 6.1 GB Report
EGAF50000216446 fastq.gz 6.5 GB Report
EGAF50000216447 fastq.gz 7.5 GB Report
EGAF50000216448 fastq.gz 6.9 GB Report
EGAF50000216449 fastq.gz 7.3 GB Report
EGAF50000216450 fastq.gz 7.3 GB Report
EGAF50000216451 fastq.gz 7.0 GB Report
EGAF50000216461 fastq.gz 8.8 GB Report
EGAF50000216462 fastq.gz 8.3 GB Report
EGAF50000216463 fastq.gz 8.7 GB Report
EGAF50000216464 fastq.gz 8.4 GB Report
EGAF50000216465 fastq.gz 8.7 GB Report
EGAF50000216466 fastq.gz 9.1 GB Report
296 Files (2.5 TB)