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DNABR

Genome variation data for 2723 Brazilian individuals from the DNA do Brasil Project.

Request Access

DUO:0000012
version: 2021-02-23

research specific restrictions

This data use modifier indicates that use is limited to studies of a certain research type.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000024
version: 2021-02-23

publication moratorium

This data use modifier indicates that requestor agrees not to publish results of studies until a specific date.

DATA ACCESS AGREEMENT

Authorised Personnel: The individuals at the User Institution to whom Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier) and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution cannot perform further research that would add intellectual and resource capital to these data and lead to obtain intellectual property rights on these downstream discoveries. 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier) within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier) prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier) as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier) may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier). In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of the Federative Republic of Brazil and shall be subject to the exclusive jurisdiction of the Brazilian courts. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier) Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of the project that created the dataset Names of other data producers/collaborators Tábita Hünemeier – Associação Genomas Brasil Specific limitations on areas of research These data cannot be used for any study that is detrimental to beliefs and myths about the origin of the ethnicities/populations included in the data set. Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY Associação Genomas Brasil (represented herein by Prof Tábita Hünemeier) intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. Associação Genomas Brasil anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGADXXXXXXXXX), and acknowledge its use in a form agreed by the User Institution with Associação Genomas Brasil.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000730 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000256074 vcf.gz 155.9 GB
EGAF50000256075 vcf.gz 63.6 GB
EGAF50000256076 vcf.gz 57.9 GB
EGAF50000256077 vcf.gz 52.7 GB
EGAF50000256078 vcf.gz 49.9 GB
EGAF50000256079 vcf.gz 116.9 GB
EGAF50000256080 tbi 243.7 kB
EGAF50000256081 vcf.gz 111.4 GB
EGAF50000256082 tbi 165.2 kB
EGAF50000256083 vcf.gz 60.3 GB
EGAF50000256084 tbi 107.5 kB
EGAF50000256085 vcf.gz 42.8 GB
EGAF50000256086 tbi 45.6 kB
EGAF50000256087 tbi 214.4 kB
EGAF50000256088 vcf.gz 5.0 GB
EGAF50000256089 tbi 328.1 kB
EGAF50000256090 vcf.gz 106.9 GB
EGAF50000256091 tbi 219.8 kB
EGAF50000256092 vcf.gz 90.6 GB
EGAF50000256093 tbi 175.0 kB
EGAF50000256094 tbi 103.7 kB
EGAF50000256095 vcf.gz 23.9 GB
EGAF50000256096 tbi 44.0 kB
EGAF50000256097 vcf.gz 78.6 GB
EGAF50000256098 vcf.gz 87.2 GB
EGAF50000256099 tbi 174.1 kB
EGAF50000256100 tbi 132.3 kB
EGAF50000256101 vcf.gz 44.4 GB
EGAF50000256102 tbi 71.2 kB
EGAF50000256103 tbi 118.1 kB
EGAF50000256104 vcf.gz 53.5 GB
EGAF50000256105 tbi 107.5 kB
EGAF50000256106 tbi 81.4 kB
EGAF50000256107 vcf.gz 26.1 GB
EGAF50000256108 vcf.gz 82.5 GB
EGAF50000256109 tbi 15.4 kB
EGAF50000256110 vcf.gz 143.3 GB
EGAF50000256111 tbi 321.6 kB
EGAF50000256112 tbi 226.9 kB
EGAF50000256113 vcf.gz 100.0 GB
EGAF50000256114 tbi 198.7 kB
EGAF50000256115 vcf.gz 88.6 GB
EGAF50000256116 tbi 175.3 kB
EGAF50000256117 tbi 110.9 kB
EGAF50000256118 vcf.gz 129.0 GB
EGAF50000256119 tbi 266.8 kB
EGAF50000256120 vcf.gz 126.0 GB
EGAF50000256121 tbi 265.4 kB
48 Files (1.9 TB)