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Colorectal cancer peritoneal metastasis

This dataset consist of 63 samples profiled on whole exome sequencing and 86 samples profiled on whole transcriptome sequencing. The Agilent SureSelect Human All Exon v6 kit (Agilent Technologies) was used for whole exome sequencing. For RNA-seq experiments, library preparation was conducted using the Tru-Seq Stranded Total RNA with Ribo-Zero Gold kit protocol (Illumina). Libraries were sequenced on a HiSeq4000 sequencer using the paired-end 150 bp read option. Sequences in cram format was provided.

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National University of Singapore data access agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions by signing this Data Access Agreement. Definitions Authorised Personnel: The individuals at the User Institution to whom NUS grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: NUS and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. NUS: The National University of Singapore with its registered address at 21 Lower Kent Ridge Road, Singapore 119077. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes, which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the User Institution that may arise (whether directly or indirectly) in any way whatsoever from the User Institution’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify NUS, within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify NUS prior to any significant changes to the protocol for the Project. 14. The User Institution will notify NUS as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. NUS may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than NUS. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Singapore and shall be subject to the exclusive jurisdiction of the courts in Singapore.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000813 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000305542 cram 5.3 GB
EGAF50000305543 cram 3.8 GB
EGAF50000305544 cram 7.8 GB
EGAF50000305545 cram 7.9 GB
EGAF50000305546 cram 4.7 GB
EGAF50000305547 cram 7.7 GB
EGAF50000305548 cram 11.4 GB
EGAF50000305549 cram 7.7 GB
EGAF50000305550 cram 4.4 GB
EGAF50000305551 cram 6.6 GB
EGAF50000305552 cram 5.4 GB
EGAF50000305553 cram 8.2 GB
EGAF50000305554 cram 4.2 GB
EGAF50000305555 cram 6.9 GB
EGAF50000305556 cram 4.6 GB
EGAF50000305557 cram 6.4 GB
EGAF50000305558 cram 3.4 GB
EGAF50000305559 cram 4.8 GB
EGAF50000305560 cram 7.5 GB
EGAF50000305561 cram 5.0 GB
EGAF50000305562 cram 4.8 GB
EGAF50000305563 cram 7.3 GB
EGAF50000305564 cram 4.1 GB
EGAF50000305565 cram 5.4 GB
EGAF50000305566 cram 5.0 GB
EGAF50000305567 cram 11.2 GB
EGAF50000305568 cram 12.6 GB
EGAF50000305569 cram 9.7 GB
EGAF50000305570 cram 10.4 GB
EGAF50000305571 cram 8.1 GB
EGAF50000305572 cram 4.9 GB
EGAF50000305573 cram 5.1 GB
EGAF50000305574 cram 5.5 GB
EGAF50000305575 cram 4.3 GB
EGAF50000305576 cram 3.6 GB
EGAF50000305577 cram 5.9 GB
EGAF50000305578 cram 7.1 GB
EGAF50000305579 cram 7.8 GB
EGAF50000305580 cram 9.0 GB
EGAF50000305581 cram 5.9 GB
EGAF50000305582 cram 3.9 GB
EGAF50000305583 cram 3.9 GB
EGAF50000305584 cram 5.2 GB
EGAF50000305585 cram 7.2 GB
EGAF50000305586 cram 4.9 GB
EGAF50000305587 cram 4.6 GB
EGAF50000305588 cram 5.1 GB
EGAF50000305589 cram 9.4 GB
EGAF50000305590 cram 5.5 GB
EGAF50000305591 cram 9.1 GB
EGAF50000305592 cram 9.2 GB
EGAF50000305593 cram 14.4 GB
EGAF50000305594 cram 9.9 GB
EGAF50000305595 cram 8.7 GB
EGAF50000305596 cram 11.5 GB
EGAF50000305597 cram 9.9 GB
EGAF50000305598 cram 9.0 GB
EGAF50000305599 cram 15.8 GB
EGAF50000305600 cram 8.3 GB
EGAF50000305601 cram 9.3 GB
EGAF50000305602 cram 10.8 GB
EGAF50000305603 cram 8.5 GB
EGAF50000305604 cram 9.2 GB
EGAF50000305605 cram 14.7 GB
EGAF50000305606 cram 9.0 GB
EGAF50000305607 cram 8.1 GB
EGAF50000305608 cram 14.9 GB
EGAF50000305609 cram 6.3 GB
EGAF50000305610 cram 5.0 GB
EGAF50000305611 cram 13.9 GB
EGAF50000305612 cram 10.3 GB
EGAF50000305613 cram 11.8 GB
EGAF50000305614 cram 9.7 GB
EGAF50000305615 cram 13.0 GB
EGAF50000305616 cram 12.0 GB
EGAF50000305617 cram 11.2 GB
EGAF50000305618 cram 9.8 GB
EGAF50000305619 cram 15.9 GB
EGAF50000305620 cram 11.2 GB
EGAF50000305621 cram 17.2 GB
EGAF50000305622 cram 15.2 GB
EGAF50000305623 cram 17.4 GB
EGAF50000305624 cram 19.8 GB
EGAF50000305625 cram 9.4 GB
EGAF50000305626 cram 8.9 GB
EGAF50000305627 cram 10.5 GB
EGAF50000305628 cram 10.1 GB
EGAF50000305629 cram 13.5 GB
EGAF50000305630 cram 11.8 GB
EGAF50000305631 cram 10.6 GB
EGAF50000305632 cram 10.3 GB
EGAF50000305633 cram 12.0 GB
EGAF50000305634 cram 10.7 GB
EGAF50000305635 cram 4.5 GB
EGAF50000305636 cram 7.3 GB
EGAF50000305637 cram 18.7 GB
EGAF50000305638 cram 4.5 GB
EGAF50000305639 cram 4.5 GB
EGAF50000305640 cram 4.9 GB
EGAF50000305641 cram 4.1 GB
EGAF50000305642 cram 6.7 GB
EGAF50000305643 cram 4.4 GB
EGAF50000305644 cram 11.8 GB
EGAF50000305645 cram 5.2 GB
EGAF50000305646 cram 3.7 GB
EGAF50000305647 cram 7.9 GB
EGAF50000305648 cram 4.9 GB
EGAF50000305649 cram 12.5 GB
EGAF50000305650 cram 6.9 GB
EGAF50000305651 cram 4.2 GB
EGAF50000305652 cram 7.9 GB
EGAF50000305653 cram 7.3 GB
EGAF50000305654 cram 3.6 GB
EGAF50000305655 cram 4.3 GB
EGAF50000305656 cram 4.9 GB
EGAF50000305657 cram 15.1 GB
EGAF50000305658 cram 11.3 GB
EGAF50000305659 cram 9.4 GB
EGAF50000305660 cram 11.4 GB
EGAF50000305661 cram 10.3 GB
EGAF50000305662 cram 9.8 GB
EGAF50000305663 cram 9.9 GB
EGAF50000305664 cram 10.3 GB
EGAF50000305665 cram 9.5 GB
EGAF50000305666 cram 17.8 GB
EGAF50000305667 cram 9.3 GB
EGAF50000305668 cram 9.2 GB
EGAF50000305669 cram 10.3 GB
EGAF50000305670 cram 10.6 GB
EGAF50000305671 cram 10.3 GB
EGAF50000305672 cram 9.8 GB
EGAF50000305673 cram 10.7 GB
EGAF50000305674 cram 7.3 GB
EGAF50000305675 cram 8.8 GB
EGAF50000305676 cram 4.7 GB
EGAF50000305677 cram 11.0 GB
EGAF50000305678 cram 9.3 GB
EGAF50000305679 cram 7.6 GB
EGAF50000305680 cram 10.0 GB
EGAF50000305681 cram 10.5 GB
EGAF50000305682 cram 4.7 GB
EGAF50000305683 cram 3.4 GB
EGAF50000305684 cram 8.0 GB
EGAF50000305685 cram 7.2 GB
EGAF50000305686 cram 4.0 GB
EGAF50000305687 cram 3.6 GB
EGAF50000305688 cram 6.5 GB
EGAF50000305689 cram 6.8 GB
EGAF50000305690 cram 7.8 GB
149 Files (1.3 TB)