About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Five Mantle Cell Lymphoma Patients Before and After Failure of Standard Chemotherapy

MCL cells were isolated from different tissues of five patients with MCL at diagnosis, and at the time of the first clinical relapse after failure of standard immunochemotherapy based on alternation of R(ituximab)-CHOP and R-high-dose-araC. All patients signed informed consent according to the Declaration of Helsinki. Four patients were diagnosed with classical nodal aggressive MCL, and all these patients experienced early relapse (i.e., progression of disease POD < 12 months). One patient was diagnosed with indolent non-nodal MCL and relapsed 9 years after initial MCL diagnosis. The dataset presents single cell RNA sequencing data as well as whole exome sequencing data for these five patients.

Request Access

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

Data Access Policy for IPP 1LF UK DAC

This dataset contains genomic and clinical data from lymphoma patients. Access to this dataset is granted for academic and non-commercial research purposes only. To request access, applicants must: - Provide a brief research statement describing the intended use of the data - Sign the Data Access Agreement (DAA) - Have approval from their institution's ethics review board where applicable - Agree not to attempt to re-identify study participants - Agree to cite the original publication in any derived works Access requests will be reviewed by the Data Access Committee (DAC). Approval is typically granted for a period of one year and can be renewed. Users must agree to: - Use the data only for the approved research purpose - Protect data confidentiality and security - Not share access credentials or transfer data to unauthorized parties - Delete or destroy the data after the approved period - Report any breach of data security immediately For technical questions regarding the dataset, contact Dmitry.Kazantsev@lf1.cuni.cz The data providers make no warranties regarding the accuracy of this data and bear no responsibility for any consequences of its use.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000825 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000309193 fastq.gz 1.9 GB
EGAF50000309194 fastq.gz 3.5 GB
EGAF50000309195 fastq.gz 3.4 GB
EGAF50000309196 fastq.gz 2.1 GB
EGAF50000309197 fastq.gz 2.2 GB
EGAF50000309198 fastq.gz 4.5 GB
EGAF50000309199 fastq.gz 1.8 GB
EGAF50000309200 fastq.gz 1.8 GB
EGAF50000309201 fastq.gz 4.0 GB
EGAF50000309202 fastq.gz 2.3 GB
EGAF50000309203 fastq.gz 2.4 GB
EGAF50000309204 fastq.gz 3.4 GB
EGAF50000309205 fastq.gz 3.4 GB
EGAF50000309206 fastq.gz 4.1 GB
EGAF50000309207 fastq.gz 4.6 GB
EGAF50000309208 fastq.gz 2.0 GB
EGAF50000309209 fastq.gz 3.5 GB
EGAF50000309210 fastq.gz 3.5 GB
EGAF50000309211 fastq.gz 3.4 GB
EGAF50000309212 fastq.gz 3.3 GB
EGAF50000309213 fastq.gz 5.6 GB
EGAF50000309214 fastq.gz 2.6 GB
EGAF50000309215 fastq.gz 2.6 GB
EGAF50000309216 fastq.gz 4.0 GB
EGAF50000309217 fastq.gz 2.6 GB
EGAF50000309218 fastq.gz 5.5 GB
EGAF50000309219 fastq.gz 4.0 GB
EGAF50000309220 fastq.gz 4.0 GB
EGAF50000309221 fastq.gz 4.0 GB
EGAF50000309222 fastq.gz 3.1 GB
EGAF50000309223 fastq.gz 3.1 GB
EGAF50000309224 fastq.gz 2.6 GB
EGAF50000309225 fastq.gz 12.9 GB
EGAF50000309226 fastq.gz 11.7 GB
EGAF50000309227 fastq.gz 10.9 GB
EGAF50000309228 fastq.gz 12.8 GB
EGAF50000309229 fastq.gz 13.9 GB
EGAF50000309230 fastq.gz 13.6 GB
EGAF50000309231 fastq.gz 14.3 GB
EGAF50000309232 fastq.gz 7.2 GB
EGAF50000309233 fastq.gz 11.6 GB
EGAF50000309234 fastq.gz 12.4 GB
EGAF50000309235 fastq.gz 17.1 GB
EGAF50000309236 fastq.gz 16.4 GB
EGAF50000309237 fastq.gz 16.3 GB
EGAF50000309238 fastq.gz 13.7 GB
EGAF50000309239 fastq.gz 14.5 GB
EGAF50000309240 fastq.gz 12.4 GB
EGAF50000309241 fastq.gz 12.9 GB
EGAF50000309242 fastq.gz 11.7 GB
EGAF50000309243 fastq.gz 11.7 GB
EGAF50000309244 fastq.gz 8.2 GB
EGAF50000309245 fastq.gz 8.7 GB
EGAF50000309246 fastq.gz 15.2 GB
EGAF50000309247 fastq.gz 15.8 GB
EGAF50000309248 fastq.gz 7.6 GB
EGAF50000309249 fastq.gz 17.1 GB
EGAF50000309250 fastq.gz 12.7 GB
58 Files (438.3 GB)