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Dataset for "HPV integration induces gene fusions" (ONT)

ONT whole-genome sequencing data for "HPV integration induces gene fusions" . We sequenced five HPV-positive head and neck cancer samples using Oxford Nanopore platform. The sequences was submitted in fastq format.

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THE HPV VIROME CONSORTIUM - DATA ACCESS AND USE AGREEMENT

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to the data sets which have been submitted to the European Genome Archive (EGA) for the restricted access by scientists working at legitimate academic institutions who have agreed to comply with the terms of a Data Access Agreement drafted by the HPV Virome Consortium Data Access Committee. There are a number of steps that a researcher must take to obtain access to this data. The process is overseen by our Data Access Committee, called the HPV Virome Consortium Data Access Committee. To reach the committee, please email Dr. David Symer at david.symer@osumc.edu or at desymer@icloud.com. Please be advised that we the undersigned investigators each are authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We confirm that this submission is consistent with the informed consent of the participants of the study and to the best of our knowledge is in accordance with applicable laws and regulations. Sincerely, David E. Symer, M.D., Ph.D. Maura L. Gillison, M.D., Ph.D. Keiko Akagi, Ph.D.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006652 Other
EGAS50000000892 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00007253416 gz 7.4 GB
EGAF00007253417 gz 74.0 GB
EGAF00007253420 fastq.gz 10.7 GB Report
EGAF00007253421 fastq.gz 86.5 GB Report
EGAF50000321575 fastq.gz 40.1 GB
EGAF50000321576 fastq.gz 36.0 GB
EGAF50000321577 fastq.gz 25.7 GB
EGAF50000321582 fastq.gz 65.8 GB
8 Files (346.1 GB)