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HPV Virome Consortium Data Access Committee

Contact Information

Dr David E Symer
david.symer@osumc.edu

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This DAC controls 11 datasets

Dataset ID	Description	Technology	Samples
EGAD00001000691	Dataset for "Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability"		12
EGAD00001004339	Dataset for "Genomic landscape of oral cancers" (CGI WGS)	Complete Genomics	59
EGAD00001004356	Dataset for "Genomic landscape of oral cancers" (Illumina WGS)		106
EGAD00001004366	Dataset for "Genomic landscape of oral cancers" (Illumina RNA)		110
EGAD00001009630	Dataset for "Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration" (Illumina)	Illumina NovaSeq 6000	3
EGAD00001009631	Dataset for "Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration" (pacBio)	Sequel II	3
EGAD00001009632	Dataset for "Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration" (ONT)	PromethION	3
EGAD50000001302	ONT whole-genome sequencing data for "HPV integration induces gene fusions" . We sequenced five HPV-positive head and neck cancer samples using Oxford Nanopore platform. The sequences was submitted in fastq format.	PromethION	5
EGAD50000001303	RNA-seq data for "HPV integration induces gene fusions" We performed RNA-seq analysis of five HPV+ head and neck cancer samples using Illumina short reads. Sequenced are submitted in bam format. We also sequenced one samples with pacBio long reads, and the reads are submitted in fastq format.	Sequel II	5
EGAD50000001304	pacBio whole-genome sequencing data for "HPV integration induces gene fusions" We performed long read whole-genome sequencing on four HPV+ head and neck cancer samples using pacBio HiFi. The sequence reads were submitted in fastq format.	Sequel II	4
EGAD50000001305	Illumina whole-genome sequencing data for "HPV integration induces gene fusions" We performed short read whole-genome sequencing of five HPV+ head and neck cancer samples using Illumina. The reads are submitted in bam or fastq file format.	Illumina NovaSeq 6000	5