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Dataset for "HPV integration induces gene fusions" (Illumina)

Illumina whole-genome sequencing data for "HPV integration induces gene fusions" We performed short read whole-genome sequencing of five HPV+ head and neck cancer samples using Illumina. The reads are submitted in bam or fastq file format.

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THE HPV VIROME CONSORTIUM - DATA ACCESS AND USE AGREEMENT

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to the data sets which have been submitted to the European Genome Archive (EGA) for the restricted access by scientists working at legitimate academic institutions who have agreed to comply with the terms of a Data Access Agreement drafted by the HPV Virome Consortium Data Access Committee. There are a number of steps that a researcher must take to obtain access to this data. The process is overseen by our Data Access Committee, called the HPV Virome Consortium Data Access Committee. To reach the committee, please email Dr. David Symer at david.symer@osumc.edu or at desymer@icloud.com. Please be advised that we the undersigned investigators each are authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We confirm that this submission is consistent with the informed consent of the participants of the study and to the best of our knowledge is in accordance with applicable laws and regulations. Sincerely, David E. Symer, M.D., Ph.D. Maura L. Gillison, M.D., Ph.D. Keiko Akagi, Ph.D.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003228 Other
EGAS00001006652 Other
EGAS50000000892 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002191275 bam 429.8 GB Report
EGAF00002191319 bam 390.3 GB Report
EGAF00007253405 bam 135.7 GB Report
EGAF50000321573 fastq.gz 114.8 GB
EGAF50000321574 fastq.gz 107.2 GB
EGAF50000321578 fastq.gz 33.5 GB
EGAF50000321579 fastq.gz 35.2 GB
7 Files (1.2 TB)