Mate pair whole genome sequencing of 98 AML samples
This dataset contains bam-files from Mate-pair whole genome sequencing of 98 AML samples. DNA was extracted from either bone marow or peripheral blood from primary AML samples. The libraries were prepared using Illumina Nextera mate pair library preparation kit, generating long-insert (2-8 kb) paired end libraries. These were sequenced on an Illumina NextSeq 500 using 2x76bp paired end chemistry. The fastq files generated by sequencing were aligned to the human hg19 reference genome (ucsc.hg19.fasta from the GATK resource bundle) using bwa (0.7.15-r1140) and duplicate reads were identified using samblaster (0.1.24).
- 30/06/2025
- 98 samples
- DAC: EGAC50000000619
- Technology: NextSeq 500
- Archive: Federated EGA Sweden Federated EGA Node
Request for data
To request access to these data, please contact request@researchdata.lu.se. Lund University will assess each request based on Swedish laws and regulations.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001084 | Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report | |
|---|---|---|---|---|
| EGAF50000381397 | bam | 5.9 GB | ||
| EGAF50000381398 | bam | 4.3 GB | ||
| EGAF50000381399 | bam | 4.0 GB | ||
| EGAF50000381400 | bam | 4.4 GB | ||
| EGAF50000381401 | bam | 5.2 GB | ||
| EGAF50000381402 | bam | 4.3 GB | ||
| EGAF50000381403 | bam | 5.7 GB | ||
| EGAF50000381404 | bam | 4.8 GB | ||
| EGAF50000381405 | bam | 7.8 GB | ||
| EGAF50000381406 | bam | 7.5 GB | ||
| EGAF50000381407 | bam | 6.8 GB | ||
| EGAF50000381408 | bam | 4.1 GB | ||
| EGAF50000381409 | bam | 5.0 GB | ||
| EGAF50000381410 | bam | 6.0 GB | ||
| EGAF50000381411 | bam | 6.8 GB | ||
| EGAF50000381412 | bam | 6.2 GB | ||
| EGAF50000381413 | bam | 5.8 GB | ||
| EGAF50000381414 | bam | 3.7 GB | ||
| EGAF50000381415 | bam | 4.3 GB | ||
| EGAF50000381416 | bam | 5.0 GB | ||
| EGAF50000381417 | bam | 4.0 GB | ||
| EGAF50000381418 | bam | 5.4 GB | ||
| EGAF50000381419 | bam | 4.8 GB | ||
| EGAF50000381420 | bam | 4.4 GB | ||
| EGAF50000381421 | bam | 3.8 GB | ||
| EGAF50000381422 | bam | 5.0 GB | ||
| EGAF50000381423 | bam | 7.3 GB | ||
| EGAF50000381424 | bam | 6.5 GB | ||
| EGAF50000381425 | bam | 4.5 GB | ||
| EGAF50000381426 | bam | 3.4 GB | ||
| EGAF50000381427 | bam | 6.9 GB | ||
| EGAF50000381428 | bam | 6.6 GB | ||
| EGAF50000381429 | bam | 4.4 GB | ||
| EGAF50000381430 | bam | 4.7 GB | ||
| EGAF50000381431 | bam | 5.6 GB | ||
| EGAF50000381432 | bam | 4.0 GB | ||
| EGAF50000381433 | bam | 5.5 GB | ||
| EGAF50000381434 | bam | 5.1 GB | ||
| EGAF50000381435 | bam | 4.4 GB | ||
| EGAF50000381436 | bam | 7.7 GB | ||
| EGAF50000381437 | bam | 10.9 GB | ||
| EGAF50000381438 | bam | 9.3 GB | ||
| EGAF50000381439 | bam | 8.0 GB | ||
| EGAF50000381440 | bam | 5.5 GB | ||
| EGAF50000381441 | bam | 5.3 GB | ||
| EGAF50000381442 | bam | 4.9 GB | ||
| EGAF50000381443 | bam | 5.9 GB | ||
| EGAF50000381444 | bam | 7.0 GB | ||
| EGAF50000381445 | bam | 5.5 GB | ||
| EGAF50000381446 | bam | 4.4 GB | ||
| EGAF50000381447 | bam | 5.3 GB | ||
| EGAF50000381448 | bam | 5.6 GB | ||
| EGAF50000381449 | bam | 4.0 GB | ||
| EGAF50000381450 | bam | 4.4 GB | ||
| EGAF50000381451 | bam | 3.9 GB | ||
| EGAF50000381452 | bam | 2.7 GB | ||
| EGAF50000381453 | bam | 4.4 GB | ||
| EGAF50000381454 | bam | 4.1 GB | ||
| EGAF50000381455 | bam | 3.8 GB | ||
| EGAF50000381456 | bam | 4.8 GB | ||
| EGAF50000381457 | bam | 4.0 GB | ||
| EGAF50000381458 | bam | 5.3 GB | ||
| EGAF50000381459 | bam | 5.5 GB | ||
| EGAF50000381460 | bam | 3.7 GB | ||
| EGAF50000381461 | bam | 4.6 GB | ||
| EGAF50000381462 | bam | 5.9 GB | ||
| EGAF50000381463 | bam | 7.7 GB | ||
| EGAF50000381464 | bam | 6.0 GB | ||
| EGAF50000381465 | bam | 5.2 GB | ||
| EGAF50000381466 | bam | 4.4 GB | ||
| EGAF50000381467 | bam | 4.3 GB | ||
| EGAF50000381468 | bam | 4.8 GB | ||
| EGAF50000381469 | bam | 6.6 GB | ||
| EGAF50000381470 | bam | 6.6 GB | ||
| EGAF50000381471 | bam | 4.7 GB | ||
| EGAF50000381472 | bam | 5.6 GB | ||
| EGAF50000381473 | bam | 5.5 GB | ||
| EGAF50000381474 | bam | 5.4 GB | ||
| EGAF50000381475 | bam | 4.1 GB | ||
| EGAF50000381476 | bam | 6.4 GB | ||
| EGAF50000381477 | bam | 4.8 GB | ||
| EGAF50000381478 | bam | 3.1 GB | ||
| EGAF50000381479 | bam | 3.0 GB | ||
| EGAF50000381480 | bam | 5.0 GB | ||
| EGAF50000381481 | bam | 6.3 GB | ||
| EGAF50000381482 | bam | 4.8 GB | ||
| EGAF50000381483 | bam | 5.3 GB | ||
| EGAF50000381484 | bam | 6.1 GB | ||
| EGAF50000381485 | bam | 5.6 GB | ||
| EGAF50000381486 | bam | 4.9 GB | ||
| EGAF50000381487 | bam | 4.7 GB | ||
| EGAF50000381488 | bam | 4.3 GB | ||
| EGAF50000381489 | bam | 3.8 GB | ||
| EGAF50000381490 | bam | 5.1 GB | ||
| EGAF50000381491 | bam | 4.9 GB | ||
| EGAF50000381492 | bam | 5.0 GB | ||
| EGAF50000381493 | bam | 4.2 GB | ||
| EGAF50000381494 | bam | 5.3 GB | ||
| 98 Files (513.8 GB) | ||||