Whole exome sequencing data from 120 AML samples

This dataset contains bam-files from whole exome sequencing of 120 paired tumor-normal pairs from AML. Tumor DNA was extracted from either bone marow or peripheral blood from primary AML samples. Normal DNA was extracted from cultured skin fibroblast samples. The libraries were prepared using the Nextera rapid capture exome kit and sequenced on an Illumina NextSeq 500 using 2x151bp paired end chemistry. The fastq files generated by sequencing were aligned to the human hg19 reference genome (ucsc.hg19.fasta from the GATK resource bundle) using bwa (0.7.9a-r786 or 0.7.15-r1140) and duplicate reads were identified using samblaster (0.1.24).

30/06/2025
232 samples
DAC: EGAC50000000619
Technology: NextSeq 500

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS50000001084	The cellular state space of AML unveils novel NPM1 subtypes with distinct clinical outcomes and immune evasion properties	Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Located in i
EGAF50000381495	bam	6.0 GB	Federated EGA
EGAF50000381496	bam	12.0 GB	Federated EGA
EGAF50000381497	bam	6.2 GB	Federated EGA
EGAF50000381498	bam	8.7 GB	Federated EGA
EGAF50000381499	bam	19.7 GB	Federated EGA
EGAF50000381500	bam	10.0 GB	Federated EGA
EGAF50000381501	bam	9.8 GB	Federated EGA
EGAF50000381502	bam	3.7 GB	Federated EGA
EGAF50000381503	bam	10.5 GB	Federated EGA
EGAF50000381504	bam	8.8 GB	Federated EGA
EGAF50000381505	bam	11.5 GB	Federated EGA
EGAF50000381506	bam	6.7 GB	Federated EGA
EGAF50000381507	bam	7.4 GB	Federated EGA
EGAF50000381508	bam	6.9 GB	Federated EGA
EGAF50000381509	bam	8.4 GB	Federated EGA
EGAF50000381510	bam	8.8 GB	Federated EGA
EGAF50000381511	bam	10.5 GB	Federated EGA
EGAF50000381512	bam	7.4 GB	Federated EGA
EGAF50000381513	bam	8.4 GB	Federated EGA
EGAF50000381514	bam	5.3 GB	Federated EGA
EGAF50000381515	bam	10.2 GB	Federated EGA
EGAF50000381516	bam	5.7 GB	Federated EGA
EGAF50000381517	bam	12.0 GB	Federated EGA
EGAF50000381518	bam	8.8 GB	Federated EGA
EGAF50000381519	bam	11.8 GB	Federated EGA
EGAF50000381520	bam	11.8 GB	Federated EGA
EGAF50000381521	bam	4.7 GB	Federated EGA
EGAF50000381522	bam	9.9 GB	Federated EGA
EGAF50000381523	bam	3.8 GB	Federated EGA
EGAF50000381524	bam	15.6 GB	Federated EGA
EGAF50000381525	bam	9.1 GB	Federated EGA
EGAF50000381526	bam	9.9 GB	Federated EGA
EGAF50000381527	bam	13.1 GB	Federated EGA
EGAF50000381528	bam	5.5 GB	Federated EGA
EGAF50000381529	bam	8.3 GB	Federated EGA
EGAF50000381530	bam	9.4 GB	Federated EGA
EGAF50000381531	bam	8.6 GB	Federated EGA
EGAF50000381532	bam	10.6 GB	Federated EGA
EGAF50000381533	bam	12.7 GB	Federated EGA
EGAF50000381534	bam	9.1 GB	Federated EGA
EGAF50000381535	bam	9.6 GB	Federated EGA
EGAF50000381536	bam	7.3 GB	Federated EGA
EGAF50000381537	bam	7.7 GB	Federated EGA
EGAF50000381538	bam	11.3 GB	Federated EGA
EGAF50000381539	bam	9.6 GB	Federated EGA
EGAF50000381540	bam	11.4 GB	Federated EGA
EGAF50000381541	bam	7.9 GB	Federated EGA
EGAF50000381542	bam	11.9 GB	Federated EGA
EGAF50000381543	bam	20.0 GB	Federated EGA
EGAF50000381544	bam	10.0 GB	Federated EGA
EGAF50000381545	bam	9.5 GB	Federated EGA
EGAF50000381546	bam	11.2 GB	Federated EGA
EGAF50000381547	bam	13.0 GB	Federated EGA
EGAF50000381548	bam	13.5 GB	Federated EGA
EGAF50000381549	bam	13.0 GB	Federated EGA
EGAF50000381550	bam	14.8 GB	Federated EGA
EGAF50000381551	bam	12.5 GB	Federated EGA
EGAF50000381552	bam	12.7 GB	Federated EGA
EGAF50000381553	bam	11.0 GB	Federated EGA
EGAF50000381554	bam	8.9 GB	Federated EGA
EGAF50000381555	bam	10.1 GB	Federated EGA
EGAF50000381556	bam	10.4 GB	Federated EGA
EGAF50000381557	bam	14.6 GB	Federated EGA
EGAF50000381558	bam	11.4 GB	Federated EGA
EGAF50000381559	bam	14.2 GB	Federated EGA
EGAF50000381560	bam	8.6 GB	Federated EGA
EGAF50000381561	bam	8.8 GB	Federated EGA
EGAF50000381562	bam	9.2 GB	Federated EGA
EGAF50000381563	bam	10.9 GB	Federated EGA
EGAF50000381564	bam	11.4 GB	Federated EGA
EGAF50000381565	bam	12.4 GB	Federated EGA
EGAF50000381566	bam	11.3 GB	Federated EGA
EGAF50000381567	bam	11.4 GB	Federated EGA
EGAF50000381568	bam	9.8 GB	Federated EGA
EGAF50000381569	bam	12.6 GB	Federated EGA
EGAF50000381570	bam	13.2 GB	Federated EGA
EGAF50000381571	bam	10.0 GB	Federated EGA
EGAF50000381572	bam	9.3 GB	Federated EGA
EGAF50000381573	bam	8.6 GB	Federated EGA
EGAF50000381574	bam	9.7 GB	Federated EGA
EGAF50000381575	bam	12.9 GB	Federated EGA
EGAF50000381576	bam	8.8 GB	Federated EGA
EGAF50000381577	bam	12.4 GB	Federated EGA
EGAF50000381578	bam	11.4 GB	Federated EGA
EGAF50000381579	bam	7.3 GB	Federated EGA
EGAF50000381580	bam	9.8 GB	Federated EGA
EGAF50000381581	bam	11.7 GB	Federated EGA
EGAF50000381582	bam	11.6 GB	Federated EGA
EGAF50000381583	bam	11.2 GB	Federated EGA
EGAF50000381584	bam	11.3 GB	Federated EGA
EGAF50000381585	bam	10.3 GB	Federated EGA
EGAF50000381586	bam	12.2 GB	Federated EGA
EGAF50000381587	bam	9.7 GB	Federated EGA
EGAF50000381588	bam	10.0 GB	Federated EGA
EGAF50000381589	bam	8.9 GB	Federated EGA
EGAF50000381590	bam	9.9 GB	Federated EGA
EGAF50000381591	bam	8.7 GB	Federated EGA
EGAF50000381592	bam	7.7 GB	Federated EGA
EGAF50000381593	bam	9.8 GB	Federated EGA
EGAF50000381594	bam	16.9 GB	Federated EGA
EGAF50000381595	bam	10.1 GB	Federated EGA
EGAF50000381596	bam	11.8 GB	Federated EGA
EGAF50000381597	bam	8.9 GB	Federated EGA
EGAF50000381598	bam	8.0 GB	Federated EGA
EGAF50000381599	bam	9.4 GB	Federated EGA
EGAF50000381600	bam	9.4 GB	Federated EGA
EGAF50000381601	bam	10.3 GB	Federated EGA
EGAF50000381602	bam	10.0 GB	Federated EGA
EGAF50000381603	bam	11.2 GB	Federated EGA
EGAF50000381604	bam	7.6 GB	Federated EGA
EGAF50000381605	bam	12.0 GB	Federated EGA
EGAF50000381606	bam	7.4 GB	Federated EGA
EGAF50000381607	bam	7.4 GB	Federated EGA
EGAF50000381608	bam	7.8 GB	Federated EGA
EGAF50000381609	bam	7.2 GB	Federated EGA
EGAF50000381610	bam	6.2 GB	Federated EGA
EGAF50000381611	bam	4.7 GB	Federated EGA
EGAF50000381612	bam	7.6 GB	Federated EGA
EGAF50000381613	bam	8.7 GB	Federated EGA
EGAF50000381614	bam	6.1 GB	Federated EGA
EGAF50000381615	bam	6.8 GB	Federated EGA
EGAF50000381616	bam	6.0 GB	Federated EGA
EGAF50000381617	bam	6.0 GB	Federated EGA
EGAF50000381618	bam	8.3 GB	Federated EGA
EGAF50000381619	bam	20.7 GB	Federated EGA
EGAF50000381620	bam	7.0 GB	Federated EGA
EGAF50000381621	bam	10.2 GB	Federated EGA
EGAF50000381622	bam	9.7 GB	Federated EGA
EGAF50000381623	bam	6.9 GB	Federated EGA
EGAF50000381624	bam	4.7 GB	Federated EGA
EGAF50000381625	bam	5.4 GB	Federated EGA
EGAF50000381626	bam	5.3 GB	Federated EGA
EGAF50000381627	bam	8.6 GB	Federated EGA
EGAF50000381628	bam	9.9 GB	Federated EGA
EGAF50000381629	bam	9.3 GB	Federated EGA
EGAF50000381630	bam	9.6 GB	Federated EGA
EGAF50000381631	bam	6.3 GB	Federated EGA
EGAF50000381632	bam	7.4 GB	Federated EGA
EGAF50000381633	bam	4.3 GB	Federated EGA
EGAF50000381634	bam	9.3 GB	Federated EGA
EGAF50000381635	bam	6.3 GB	Federated EGA
EGAF50000381636	bam	8.5 GB	Federated EGA
EGAF50000381637	bam	10.3 GB	Federated EGA
EGAF50000381638	bam	9.1 GB	Federated EGA
EGAF50000381639	bam	4.8 GB	Federated EGA
EGAF50000381640	bam	8.8 GB	Federated EGA
EGAF50000381641	bam	10.2 GB	Federated EGA
EGAF50000381642	bam	9.5 GB	Federated EGA
EGAF50000381643	bam	7.2 GB	Federated EGA
EGAF50000381644	bam	7.0 GB	Federated EGA
EGAF50000381645	bam	14.5 GB	Federated EGA
EGAF50000381646	bam	8.2 GB	Federated EGA
EGAF50000381647	bam	9.7 GB	Federated EGA
EGAF50000381648	bam	12.5 GB	Federated EGA
EGAF50000381649	bam	6.3 GB	Federated EGA
EGAF50000381650	bam	7.2 GB	Federated EGA
EGAF50000381651	bam	7.6 GB	Federated EGA
EGAF50000381652	bam	7.1 GB	Federated EGA
EGAF50000381653	bam	6.8 GB	Federated EGA
EGAF50000381654	bam	8.0 GB	Federated EGA
EGAF50000381655	bam	11.7 GB	Federated EGA
EGAF50000381656	bam	9.9 GB	Federated EGA
EGAF50000381657	bam	6.6 GB	Federated EGA
EGAF50000381658	bam	8.0 GB	Federated EGA
EGAF50000381659	bam	10.2 GB	Federated EGA
EGAF50000381660	bam	9.6 GB	Federated EGA
EGAF50000381661	bam	13.5 GB	Federated EGA
EGAF50000381662	bam	11.7 GB	Federated EGA
EGAF50000381663	bam	9.6 GB	Federated EGA
EGAF50000381664	bam	8.2 GB	Federated EGA
EGAF50000381665	bam	10.3 GB	Federated EGA
EGAF50000381666	bam	9.0 GB	Federated EGA
EGAF50000381667	bam	8.9 GB	Federated EGA
EGAF50000381668	bam	9.5 GB	Federated EGA
EGAF50000381669	bam	9.6 GB	Federated EGA
EGAF50000381670	bam	10.1 GB	Federated EGA
EGAF50000381671	bam	13.6 GB	Federated EGA
EGAF50000381672	bam	6.0 GB	Federated EGA
EGAF50000381673	bam	10.4 GB	Federated EGA
EGAF50000381674	bam	9.6 GB	Federated EGA
EGAF50000381675	bam	7.6 GB	Federated EGA
EGAF50000381676	bam	7.4 GB	Federated EGA
EGAF50000381677	bam	8.4 GB	Federated EGA
EGAF50000381678	bam	7.7 GB	Federated EGA
EGAF50000381679	bam	9.5 GB	Federated EGA
EGAF50000381680	bam	8.2 GB	Federated EGA
EGAF50000381681	bam	12.4 GB	Federated EGA
EGAF50000381682	bam	11.7 GB	Federated EGA
EGAF50000381683	bam	10.0 GB	Federated EGA
EGAF50000381684	bam	9.2 GB	Federated EGA
EGAF50000381685	bam	8.8 GB	Federated EGA
EGAF50000381686	bam	12.3 GB	Federated EGA
EGAF50000381687	bam	10.7 GB	Federated EGA
EGAF50000381688	bam	10.4 GB	Federated EGA
EGAF50000381689	bam	8.1 GB	Federated EGA
EGAF50000381690	bam	8.2 GB	Federated EGA
EGAF50000381691	bam	12.5 GB	Federated EGA
EGAF50000381692	bam	8.1 GB	Federated EGA
EGAF50000381693	bam	10.8 GB	Federated EGA
EGAF50000381694	bam	10.0 GB	Federated EGA
EGAF50000381695	bam	11.3 GB	Federated EGA
EGAF50000381696	bam	8.6 GB	Federated EGA
EGAF50000381697	bam	10.7 GB	Federated EGA
EGAF50000381698	bam	9.0 GB	Federated EGA
EGAF50000381699	bam	10.0 GB	Federated EGA
EGAF50000381728	bam	10.3 GB	Federated EGA
EGAF50000382041	bam	10.1 GB	Federated EGA
EGAF50000382051	bam	8.5 GB	Federated EGA
EGAF50000382067	bam	8.3 GB	Federated EGA
EGAF50000382300	bam	10.3 GB	Federated EGA
EGAF50000382302	bam	8.8 GB	Federated EGA
EGAF50000382303	bam	11.2 GB	Federated EGA
EGAF50000382370	bam	12.1 GB	Federated EGA
EGAF50000383585	bam	12.2 GB	Federated EGA
EGAF50000383759	bam	8.8 GB	Federated EGA
EGAF50000383760	bam	7.7 GB	Federated EGA
EGAF50000383761	bam	11.7 GB	Federated EGA
EGAF50000383762	bam	13.1 GB	Federated EGA
EGAF50000383763	bam	9.7 GB	Federated EGA
EGAF50000383764	bam	12.2 GB	Federated EGA
EGAF50000383765	bam	5.6 GB	Federated EGA
EGAF50000383860	bam	7.6 GB	Federated EGA
EGAF50000383861	bam	9.3 GB	Federated EGA
EGAF50000384174	bam	7.6 GB	Federated EGA
EGAF50000384229	bam	7.9 GB	Federated EGA
EGAF50000384230	bam	6.8 GB	Federated EGA
EGAF50000384231	bam	8.3 GB	Federated EGA
EGAF50000384232	bam	8.3 GB	Federated EGA
EGAF50000384233	bam	5.1 GB	Federated EGA
EGAF50000384234	bam	8.2 GB	Federated EGA
EGAF50000384235	bam	9.1 GB	Federated EGA
EGAF50000384236	bam	7.1 GB	Federated EGA
232 Files (2.2 TB)