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Genomic characterization of aggressiveness in pituitary neuroendocrine tumors (PitNETs)

RNA sequencing data of 227 samples of PitNETs in the context of the genomic characterization of aggressiveness of PitNETs

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DATA ACCESS AGREEMENT

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom AREP grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: AREP and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. AREP: Association pour la Recherche et l’Enseignement en Pathologie Laboratoire de Pathologie Hopital Ambroise Paré 9 avenue Charles de Gaulle 92104 Boulogne-Billancourt cedex 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify AREP within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify AREP prior to any significant changes to the protocol for the Project. 14. The User Institution will notify AREP as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. AREP may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than AREP. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of France and shall be subject to the exclusive jurisdiction of the French courts. Specific limitations on areas of research This research is aimed at studying the genomic alterations occurring in pituitary adenomas. Therefore these data can only be used for analyzing the SOMATIC genome and epigenome, formally EXCLUDING any study focusing on the GERMLINE genome of individuals included in this project.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001414 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000498738 bam 2.1 GB
EGAF50000498739 bam 2.0 GB
EGAF50000498740 bam 340.0 MB
EGAF50000498741 bam 291.0 MB
EGAF50000498742 bam 159.2 MB
EGAF50000498743 bam 372.2 MB
EGAF50000498744 bam 452.6 MB
EGAF50000498745 bam 316.1 MB
EGAF50000498746 bam 385.0 MB
EGAF50000498747 bam 405.0 MB
EGAF50000498748 bam 263.7 MB
EGAF50000498749 bam 382.8 MB
EGAF50000498750 bam 322.7 MB
EGAF50000498751 bam 243.5 MB
EGAF50000498752 bam 416.7 MB
EGAF50000498753 bam 400.8 MB
EGAF50000498754 bam 368.7 MB
EGAF50000498755 bam 254.6 MB
EGAF50000498756 bam 216.9 MB
EGAF50000498757 bam 318.4 MB
EGAF50000498758 bam 260.6 MB
EGAF50000498759 bam 258.5 MB
EGAF50000498760 bam 294.0 MB
EGAF50000498761 bam 232.5 MB
EGAF50000498762 bam 314.1 MB
EGAF50000498763 bam 263.6 MB
EGAF50000498764 bam 240.4 MB
EGAF50000498765 bam 320.0 MB
EGAF50000498766 bam 324.3 MB
EGAF50000498767 bam 402.1 MB
EGAF50000498768 bam 297.7 MB
EGAF50000498769 bam 391.8 MB
EGAF50000498770 bam 344.1 MB
EGAF50000498771 bam 280.5 MB
EGAF50000498772 bam 382.0 MB
EGAF50000498773 bam 290.8 MB
EGAF50000498774 bam 340.0 MB
EGAF50000498775 bam 312.7 MB
EGAF50000498776 bam 259.3 MB
EGAF50000498777 bam 522.3 MB
EGAF50000498778 bam 436.4 MB
EGAF50000498779 bam 323.4 MB
EGAF50000498780 bam 298.2 MB
EGAF50000498781 bam 501.9 MB
EGAF50000498782 bam 472.3 MB
EGAF50000498783 bam 404.8 MB
EGAF50000498784 bam 398.0 MB
EGAF50000498785 bam 419.6 MB
EGAF50000498786 bam 351.6 MB
EGAF50000498787 bam 456.7 MB
EGAF50000498788 bam 359.8 MB
EGAF50000498789 bam 302.9 MB
EGAF50000498790 bam 364.7 MB
EGAF50000498791 bam 353.5 MB
EGAF50000498792 bam 405.4 MB
EGAF50000498793 bam 285.3 MB
EGAF50000498794 bam 537.0 MB
EGAF50000498795 bam 353.1 MB
EGAF50000498796 bam 350.6 MB
EGAF50000498797 bam 433.4 MB
EGAF50000498798 bam 273.1 MB
EGAF50000498799 bam 379.0 MB
EGAF50000498800 bam 442.6 MB
EGAF50000498801 bam 353.6 MB
EGAF50000498802 bam 250.1 MB
EGAF50000498803 bam 397.0 MB
EGAF50000498804 bam 249.7 MB
EGAF50000498805 bam 531.8 MB
EGAF50000498806 bam 594.7 MB
EGAF50000498807 bam 368.0 MB
EGAF50000498808 bam 299.0 MB
EGAF50000498809 bam 435.0 MB
EGAF50000498810 bam 477.7 MB
EGAF50000498811 bam 342.4 MB
EGAF50000498812 bam 318.8 MB
EGAF50000498813 bam 498.6 MB
EGAF50000498814 bam 365.1 MB
EGAF50000498815 bam 539.5 MB
EGAF50000498816 bam 1.9 GB
EGAF50000498817 bam 2.3 GB
EGAF50000498818 bam 2.6 GB
EGAF50000498819 bam 3.5 GB
EGAF50000498820 bam 2.9 GB
EGAF50000498821 bam 2.9 GB
EGAF50000498822 bam 2.5 GB
EGAF50000498823 bam 1.8 GB
EGAF50000498824 bam 1.1 GB
EGAF50000498825 bam 894.7 MB
EGAF50000498826 bam 588.4 MB
EGAF50000498827 bam 771.0 MB
EGAF50000498828 bam 34.6 MB
EGAF50000498829 bam 1.2 GB
EGAF50000498830 bam 2.3 GB
EGAF50000498831 bam 3.4 GB
EGAF50000498832 bam 2.4 GB
EGAF50000498833 bam 2.6 GB
EGAF50000498834 bam 1.8 GB
EGAF50000498835 bam 2.4 GB
EGAF50000498836 bam 4.1 GB
EGAF50000498837 bam 2.3 GB
EGAF50000498838 bam 3.9 GB
EGAF50000498839 bam 3.2 GB
EGAF50000498840 bam 2.3 GB
EGAF50000498841 bam 3.3 GB
EGAF50000498842 bam 1.3 GB
EGAF50000498843 bam 1.6 GB
EGAF50000498844 bam 3.1 GB
EGAF50000498845 bam 1.5 GB
EGAF50000498846 bam 2.9 GB
EGAF50000498847 bam 1.8 GB
EGAF50000498848 bam 2.2 GB
EGAF50000498849 bam 2.1 GB
EGAF50000498850 bam 3.5 GB
EGAF50000498851 bam 2.5 GB
EGAF50000498852 bam 2.2 GB
EGAF50000498853 bam 2.9 GB
EGAF50000498854 bam 2.6 GB
EGAF50000498855 bam 3.3 GB
EGAF50000498856 bam 2.1 GB
EGAF50000498857 bam 3.6 GB
EGAF50000498858 bam 2.7 GB
EGAF50000498859 bam 3.2 GB
EGAF50000498860 bam 2.1 GB
EGAF50000498861 bam 2.3 GB
EGAF50000498862 bam 530.7 MB
EGAF50000498863 bam 2.7 GB
EGAF50000498864 bam 2.5 GB
EGAF50000498865 bam 3.6 GB
EGAF50000498866 bam 3.2 GB
EGAF50000498867 bam 1.6 GB
EGAF50000498868 bam 3.0 GB
EGAF50000498869 bam 2.5 GB
EGAF50000498870 bam 2.7 GB
EGAF50000498871 bam 1.6 GB
EGAF50000498872 bam 3.3 GB
EGAF50000498873 bam 2.8 GB
EGAF50000498874 bam 3.7 GB
EGAF50000498875 bam 1.5 GB
EGAF50000498876 bam 3.5 GB
EGAF50000498877 bam 2.8 GB
EGAF50000498878 bam 3.2 GB
EGAF50000498879 bam 2.7 GB
EGAF50000498880 bam 2.5 GB
EGAF50000498881 bam 3.4 GB
EGAF50000498882 bam 2.8 GB
EGAF50000498883 bam 3.8 GB
EGAF50000498884 bam 2.6 GB
EGAF50000498885 bam 3.4 GB
EGAF50000498886 bam 2.5 GB
EGAF50000498887 bam 1.7 GB
EGAF50000498888 bam 1.6 GB
EGAF50000498889 bam 3.2 GB
EGAF50000498890 bam 4.3 GB
EGAF50000498891 bam 2.2 GB
EGAF50000498892 bam 1.6 GB
EGAF50000498893 bam 3.6 GB
EGAF50000498894 bam 1.7 GB
EGAF50000498895 bam 3.0 GB
EGAF50000498896 bam 2.4 GB
EGAF50000498897 bam 3.8 GB
EGAF50000498898 bam 3.8 GB
EGAF50000498899 bam 1.7 GB
EGAF50000498900 bam 3.2 GB
EGAF50000498901 bam 4.3 GB
EGAF50000498902 bam 5.9 GB
EGAF50000498903 bam 3.8 GB
EGAF50000498904 bam 1.8 GB
EGAF50000498905 bam 3.4 GB
EGAF50000498906 bam 4.2 GB
EGAF50000498907 bam 1.8 GB
EGAF50000498908 bam 2.0 GB
EGAF50000498909 bam 2.2 GB
EGAF50000498910 bam 4.0 GB
EGAF50000498911 bam 2.4 GB
EGAF50000498912 bam 2.6 GB
EGAF50000498913 bam 3.8 GB
EGAF50000498914 bam 3.3 GB
EGAF50000498915 bam 4.0 GB
EGAF50000498916 bam 1.7 GB
EGAF50000498917 bam 1.7 GB
EGAF50000498918 bam 2.3 GB
EGAF50000498919 bam 3.6 GB
EGAF50000498920 bam 1.8 GB
EGAF50000498921 bam 4.0 GB
EGAF50000498922 bam 1.8 GB
EGAF50000498923 bam 3.3 GB
EGAF50000498924 bam 2.2 GB
EGAF50000498925 bam 2.2 GB
EGAF50000498926 bam 2.0 GB
EGAF50000498927 bam 3.4 GB
EGAF50000498928 bam 2.1 GB
EGAF50000498929 bam 2.4 GB
EGAF50000498930 bam 4.5 GB
EGAF50000498931 bam 3.6 GB
EGAF50000498932 bam 3.2 GB
EGAF50000498933 bam 3.4 GB
EGAF50000498934 bam 3.4 GB
EGAF50000498935 bam 3.3 GB
EGAF50000498936 bam 1.1 GB
EGAF50000498937 bam 3.2 GB
EGAF50000498938 bam 3.0 GB
EGAF50000498939 bam 3.7 GB
EGAF50000498940 bam 3.7 GB
EGAF50000498941 bam 2.7 GB
EGAF50000498942 bam 2.0 GB
EGAF50000498943 bam 1.7 GB
EGAF50000498944 bam 349.8 MB
EGAF50000498945 bam 884.2 MB
EGAF50000498946 bam 1.6 GB
EGAF50000498947 bam 2.9 GB
EGAF50000498948 bam 1.8 GB
EGAF50000498949 bam 2.2 GB
EGAF50000498950 bam 2.7 GB
EGAF50000498951 bam 2.2 GB
EGAF50000498952 bam 2.6 GB
EGAF50000498953 bam 2.8 GB
EGAF50000498954 bam 284.2 MB
EGAF50000498955 bam 1.5 GB
EGAF50000498956 bam 2.5 GB
EGAF50000498957 bam 1.5 GB
EGAF50000498958 bam 1.7 GB
EGAF50000498959 bam 3.3 GB
EGAF50000498960 bam 97.8 MB
EGAF50000498961 bam 374.8 MB
EGAF50000498962 bam 4.1 GB
EGAF50000498963 bam 242.0 MB
EGAF50000498964 bam 294.0 MB
227 Files (408.9 GB)