WGS data of paediatric hyperdiploid B cell acute lymphoblastic leukemia (set3)
The dataset includes FASTQ and BAM/CRAM files from diagnostic and matched remission (control) samples of eight hyperdiploid ALL patients (ALLT-364, ALLT-367, ALLT-368, ALLT-371, ALLT-377, ALLK-111, ALLT-382, ALLT-395). Sequencing libraries were made using PCR free-based WGS library preparation (PCR-), NEBNext® Ultra™ II DNA Library Prep Kit (Cat No. E7645). Both diagnostic (90x) and remission (30x) samples were sequenced using Illumina NovaSeq 6000.
- 23/03/2026
- 16 samples
- DAC: EGAC00001001551
- Technology: Illumina NovaSeq 6000
Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital
Data will be shared if the proposed project falls within the patient/caretaker consent
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001690 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000695044 | fq.gz | 26.9 GB |
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| EGAF50000695048 | fq.gz | 27.2 GB |
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| EGAF50000695049 | fq.gz | 28.6 GB |
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| EGAF50000695050 | fq.gz | 32.4 GB |
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| EGAF50000695051 | fq.gz | 349.6 MB |
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| EGAF50000695053 | bai | 9.4 MB |
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| EGAF50000695054 | bai | 9.3 MB |
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| EGAF50000695055 | bam | 103.6 GB |
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| EGAF50000695056 | bam | 47.4 GB |
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| EGAF50000695057 | bam | 73.8 GB |
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| EGAF50000695058 | bai | 9.3 MB |
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| EGAF50000695059 | bam | 39.9 GB |
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| EGAF50000695060 | bai | 9.3 MB |
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| EGAF50000695061 | bam | 86.5 GB |
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| EGAF50000695062 | bam | 39.9 GB |
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| EGAF50000695068 | crai | 1.1 MB |
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| EGAF50000695069 | cram | 27.9 GB |
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| EGAF50000695075 | crai | 2.5 MB |
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| EGAF50000695076 | cram | 11.4 GB |
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| EGAF50000695084 | bai | 9.3 MB |
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| EGAF50000695085 | bai | 9.4 MB |
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| EGAF50000695086 | bam | 83.0 GB |
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| EGAF50000695087 | bai | 9.3 MB |
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| EGAF50000695088 | bai | 9.3 MB |
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| EGAF50000695090 | crai | 923.2 kB |
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| EGAF50000695091 | cram | 9.0 GB |
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| EGAF50000695092 | crai | 2.5 MB |
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| EGAF50000695093 | cram | 26.4 GB |
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| EGAF50000695116 | fq.gz | 15.6 GB |
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| EGAF50000695117 | fq.gz | 16.7 GB |
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| EGAF50000695118 | fq.gz | 13.5 GB |
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| EGAF50000695119 | fq.gz | 794.9 MB |
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| EGAF50000695120 | fq.gz | 9.8 GB |
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| EGAF50000695121 | fq.gz | 10.4 GB |
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| EGAF50000695122 | fq.gz | 27.2 GB |
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| EGAF50000695127 | fq.gz | 65.1 GB |
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| EGAF50000695128 | fq.gz | 23.4 GB |
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| EGAF50000695129 | fq.gz | 24.3 GB |
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| EGAF50000695130 | fq.gz | 24.6 GB |
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| EGAF50000695131 | fq.gz | 22.1 GB |
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| EGAF50000695132 | fq.gz | 23.2 GB |
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| EGAF50000695133 | fq.gz | 22.3 GB |
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| EGAF50000695134 | fq.gz | 23.6 GB |
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| EGAF50000695135 | fq.gz | 579.5 MB |
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| EGAF50000695136 | fq.gz | 20.9 GB |
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| EGAF50000695137 | fq.gz | 48.9 GB |
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| EGAF50000695144 | fq.gz | 23.5 GB |
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| EGAF50000695145 | fq.gz | 46.2 GB |
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| EGAF50000695148 | fq.gz | 736.4 MB |
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| EGAF50000695149 | fq.gz | 782.3 MB |
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| EGAF50000695152 | fq.gz | 42.8 GB |
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| EGAF50000695168 | fq.gz | 377.3 MB |
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| EGAF50000695169 | fq.gz | 27.9 GB |
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| EGAF50000695170 | fq.gz | 29.6 GB |
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| EGAF50000695171 | fq.gz | 41.0 GB |
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| EGAF50000695182 | bai | 9.3 MB |
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| EGAF50000695185 | bam | 50.7 GB |
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| EGAF50000695186 | bai | 9.4 MB |
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| EGAF50000695187 | bam | 44.5 GB |
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| EGAF50000695189 | bam | 78.9 GB |
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| EGAF50000695207 | crai | 943.7 kB |
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| EGAF50000695208 | cram | 9.7 GB |
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| EGAF50000695209 | crai | 2.4 MB |
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| EGAF50000695210 | cram | 27.0 GB |
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| EGAF50000695212 | fq.gz | 545.5 MB |
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| EGAF50000695213 | fq.gz | 26.5 GB |
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| EGAF50000695214 | fq.gz | 21.6 GB |
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| EGAF50000695215 | fq.gz | 26.0 GB |
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| EGAF50000695216 | fq.gz | 27.1 GB |
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| EGAF50000695217 | fq.gz | 62.5 GB |
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| EGAF50000695218 | fq.gz | 687.9 MB |
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| EGAF50000695219 | fq.gz | 20.7 GB |
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| EGAF50000695220 | fq.gz | 652.7 MB |
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| EGAF50000695221 | fq.gz | 21.3 GB |
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| EGAF50000695226 | fq.gz | 22.0 GB |
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| EGAF50000695227 | fq.gz | 7.6 GB |
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| EGAF50000695237 | fq.gz | 19.6 GB |
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| EGAF50000695238 | fq.gz | 21.2 GB |
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| EGAF50000695241 | fq.gz | 19.4 GB |
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| EGAF50000695254 | fq.gz | 28.4 GB |
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| EGAF50000695255 | fq.gz | 12.5 GB |
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| EGAF50000695257 | fq.gz | 848.5 MB |
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| EGAF50000695258 | fq.gz | 23.3 GB |
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| EGAF50000695259 | fq.gz | 25.2 GB |
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| EGAF50000695260 | fq.gz | 29.2 GB |
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| EGAF50000695261 | fq.gz | 25.9 GB |
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| EGAF50000695262 | fq.gz | 28.1 GB |
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| EGAF50000695263 | fq.gz | 21.4 GB |
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| EGAF50000695264 | fq.gz | 7.0 GB |
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| EGAF50000695272 | fq.gz | 23.9 GB |
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| EGAF50000695274 | fq.gz | 28.0 GB |
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| EGAF50000695275 | fq.gz | 30.2 GB |
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| EGAF50000695309 | fq.gz | 28.7 GB |
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| EGAF50000695314 | fq.gz | 30.2 GB |
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| 94 Files (2.1 TB) | ||||