WGS data of paediatric hyperdiploid B cell acute lymphoblastic leukemia (set5)
The dataset includes FASTQ and CRAM files from diagnostic and matched remission (control) samples of four hyperdiploid ALL patients (ALLT-502, ALLK-130, ALLK-137, ALLK-139). Sequencing libraries were made using PCR free-based WGS library preparation (PCR-), using Novogene NGS DNA Library Prep Set (Cat No. PT004). Both diagnostic (90x) and remission (30x) samples were sequenced using Illumina NovaSeq X Plus.
- 23/03/2026
- 8 samples
- DAC: EGAC00001001551
- Technology: Illumina NovaSeq X Plus
Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital
Data will be shared if the proposed project falls within the patient/caretaker consent
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001690 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000695043 | cram | 21.9 GB |
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| EGAF50000695046 | fq.gz | 9.5 GB |
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| EGAF50000695047 | fq.gz | 8.8 GB |
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| EGAF50000695065 | cram | 24.5 GB |
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| EGAF50000695070 | crai | 2.4 MB |
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| EGAF50000695071 | crai | 793.8 kB |
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| EGAF50000695113 | fq.gz | 10.6 GB |
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| EGAF50000695114 | fq.gz | 10.5 GB |
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| EGAF50000695115 | fq.gz | 14.1 GB |
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| EGAF50000695123 | fq.gz | 11.8 GB |
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| EGAF50000695124 | fq.gz | 9.4 GB |
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| EGAF50000695125 | fq.gz | 9.4 GB |
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| EGAF50000695126 | fq.gz | 16.7 GB |
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| EGAF50000695138 | fq.gz | 12.2 GB |
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| EGAF50000695139 | fq.gz | 16.8 GB |
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| EGAF50000695140 | fq.gz | 16.7 GB |
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| EGAF50000695141 | fq.gz | 21.2 GB |
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| EGAF50000695142 | fq.gz | 14.9 GB |
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| EGAF50000695143 | fq.gz | 14.8 GB |
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| EGAF50000695146 | fq.gz | 12.3 GB |
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| EGAF50000695147 | fq.gz | 21.2 GB |
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| EGAF50000695154 | fq.gz | 12.1 GB |
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| EGAF50000695173 | crai | 662.2 kB |
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| EGAF50000695174 | cram | 6.2 GB |
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| EGAF50000695175 | crai | 2.1 MB |
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| EGAF50000695177 | crai | 703.7 kB |
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| EGAF50000695178 | crai | 2.4 MB |
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| EGAF50000695179 | cram | 27.0 GB |
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| EGAF50000695190 | cram | 5.8 GB |
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| EGAF50000695191 | cram | 6.5 GB |
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| EGAF50000695193 | cram | 24.1 GB |
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| EGAF50000695194 | crai | 771.7 kB |
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| EGAF50000695195 | cram | 6.4 GB |
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| EGAF50000695196 | crai | 2.4 MB |
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| EGAF50000695233 | fq.gz | 12.9 GB |
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| EGAF50000695234 | fq.gz | 13.0 GB |
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| EGAF50000695244 | fq.gz | 10.5 GB |
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| EGAF50000695246 | fq.gz | 11.2 GB |
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| EGAF50000695252 | fq.gz | 4.6 GB |
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| EGAF50000695253 | fq.gz | 4.6 GB |
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| EGAF50000695256 | fq.gz | 11.0 GB |
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| EGAF50000695273 | fq.gz | 9.0 GB |
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| EGAF50000695276 | fq.gz | 11.9 GB |
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| EGAF50000695278 | fq.gz | 12.3 GB |
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| EGAF50000695279 | fq.gz | 12.2 GB |
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| EGAF50000695287 | fq.gz | 11.6 GB |
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| EGAF50000695288 | fq.gz | 16.9 GB |
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| EGAF50000695289 | fq.gz | 10.8 GB |
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| EGAF50000695290 | fq.gz | 9.0 GB |
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| EGAF50000695291 | fq.gz | 8.4 GB |
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| EGAF50000695294 | fq.gz | 13.8 GB |
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| EGAF50000695295 | fq.gz | 13.8 GB |
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| EGAF50000695296 | fq.gz | 14.0 GB |
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| EGAF50000695298 | fq.gz | 11.1 GB |
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| EGAF50000695299 | fq.gz | 10.8 GB |
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| EGAF50000695302 | fq.gz | 20.5 GB |
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| EGAF50000695303 | fq.gz | 17.8 GB |
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| EGAF50000695304 | fq.gz | 17.7 GB |
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| EGAF50000695305 | fq.gz | 10.4 GB |
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| EGAF50000695306 | fq.gz | 9.8 GB |
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| EGAF50000695307 | fq.gz | 10.6 GB |
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| EGAF50000695308 | fq.gz | 9.7 GB |
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| EGAF50000695310 | fq.gz | 9.5 GB |
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| EGAF50000695311 | fq.gz | 11.2 GB |
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| EGAF50000695312 | fq.gz | 10.3 GB |
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| EGAF50000695315 | fq.gz | 15.3 GB |
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| EGAF50000695316 | fq.gz | 20.6 GB |
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| EGAF50000695317 | fq.gz | 8.8 GB |
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| EGAF50000695318 | fq.gz | 8.3 GB |
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| EGAF50000695319 | fq.gz | 15.2 GB |
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| 70 Files (794.4 GB) | ||||