About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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SCA1 and control cerebral organoids

3' RNA-sequencing data of cerebral organoids from controls and individuals with SCA1 was performed at day 31 and day 60 of organoid formation. Matched case-control cerebral organoids were used (Ctrl A+SCA1 A and Ctrl B+SCA1 B) as well as isogenic cerebral organoids, CRISPR/Cas9 gene-edited from Ctrl A (SCA1-/CAG and SCA1CAG/CAG). Biological triplicates were assessed for all lines at both time points.

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Policy: LUMC Department Human Genetics, NeuroD-group

Controlled access required because the study concerns linked phenotype and genotype data from human subjects which should not be traced back to the donors. Citation plus acknowledgement will be required.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001720 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000728345 fastq.gz 2.0 GB
EGAF50000728346 fastq.gz 1.9 GB
EGAF50000728347 fastq.gz 2.0 GB
EGAF50000728348 fastq.gz 2.0 GB
EGAF50000728349 fastq.gz 2.4 GB
EGAF50000728350 fastq.gz 2.0 GB
EGAF50000728351 fastq.gz 1.9 GB
EGAF50000728352 fastq.gz 1.9 GB
EGAF50000728353 fastq.gz 1.9 GB
EGAF50000728354 fastq.gz 2.3 GB
EGAF50000728355 fastq.gz 2.1 GB
EGAF50000728356 fastq.gz 2.1 GB
EGAF50000728357 fastq.gz 2.1 GB
EGAF50000728358 fastq.gz 2.1 GB
EGAF50000728359 fastq.gz 2.0 GB
EGAF50000728360 fastq.gz 2.2 GB
EGAF50000728361 fastq.gz 2.2 GB
EGAF50000728362 fastq.gz 2.0 GB
EGAF50000728363 fastq.gz 2.0 GB
EGAF50000728364 fastq.gz 2.1 GB
EGAF50000728365 fastq.gz 2.2 GB
EGAF50000728366 fastq.gz 2.3 GB
EGAF50000728367 fastq.gz 2.1 GB
EGAF50000728368 fastq.gz 2.2 GB
EGAF50000728369 fastq.gz 2.0 GB
EGAF50000728370 fastq.gz 1.7 GB
EGAF50000728371 fastq.gz 1.8 GB
EGAF50000728372 fastq.gz 1.8 GB
EGAF50000728373 fastq.gz 1.9 GB
EGAF50000728374 fastq.gz 2.0 GB
EGAF50000728375 fastq.gz 2.1 GB
EGAF50000728376 fastq.gz 2.0 GB
EGAF50000728377 fastq.gz 2.1 GB
EGAF50000728378 fastq.gz 2.3 GB
EGAF50000728379 fastq.gz 2.4 GB
EGAF50000728380 fastq.gz 2.3 GB
EGAF50000728381 fastq.gz 2.3 GB
EGAF50000728382 fastq.gz 2.4 GB
EGAF50000728383 fastq.gz 2.5 GB
EGAF50000728384 fastq.gz 2.0 GB
EGAF50000728385 fastq.gz 2.1 GB
EGAF50000728386 fastq.gz 2.0 GB
EGAF50000728387 fastq.gz 2.0 GB
EGAF50000728388 fastq.gz 2.0 GB
EGAF50000728389 fastq.gz 1.8 GB
EGAF50000728390 fastq.gz 1.9 GB
EGAF50000728391 fastq.gz 1.8 GB
EGAF50000728392 fastq.gz 2.0 GB
EGAF50000728393 fastq.gz 2.0 GB
EGAF50000728394 fastq.gz 2.1 GB
EGAF50000728395 fastq.gz 1.9 GB
EGAF50000728396 fastq.gz 2.0 GB
EGAF50000728397 fastq.gz 2.5 GB
EGAF50000728398 fastq.gz 2.5 GB
EGAF50000728399 fastq.gz 2.6 GB
EGAF50000728400 fastq.gz 2.0 GB
EGAF50000728401 fastq.gz 2.1 GB
EGAF50000728402 fastq.gz 2.3 GB
EGAF50000728403 fastq.gz 2.5 GB
EGAF50000728404 fastq.gz 2.5 GB
EGAF50000728405 fastq.gz 2.3 GB
EGAF50000728406 fastq.gz 2.4 GB
EGAF50000728407 fastq.gz 2.4 GB
EGAF50000728408 fastq.gz 2.5 GB
EGAF50000728409 fastq.gz 2.1 GB
EGAF50000728410 fastq.gz 2.2 GB
EGAF50000728411 fastq.gz 2.1 GB
EGAF50000728412 fastq.gz 2.2 GB
EGAF50000728413 fastq.gz 2.1 GB
EGAF50000728414 fastq.gz 2.2 GB
EGAF50000728415 fastq.gz 2.0 GB
EGAF50000728416 fastq.gz 2.1 GB
72 Files (152.6 GB)