Whole-exome sequencing of paired tumor and germline samples from Mexican patients with testicular germ cell tumors
This dataset contains raw whole-exome sequencing (WES) data from 79 samples derived from 40 Mexican patients diagnosed with testicular germ cell tumors (TGCT) treated at the National Cancer Institute of Mexico (INCan). The dataset includes 40 peripheral blood samples representing germline DNA and 38 tumor tissue samples. Sequencing libraries were prepared using the NimbleGen SeqCap EZ Exome V3 capture kit and sequenced on the Illumina HiSeq 2500 platform, generating 100 bp paired-end reads. Tumor samples were sequenced at an average coverage of ~100×, and germline samples at ~60×. Raw sequencing data are provided as paired-end FASTQ files (compressed and encrypted).
- 23/04/2026
- 78 samples
- DAC: EGAC50000000959
- Technology: Illumina HiSeq 2500
Controlled access for research on cancer genomics
Access to this dataset will be granted for scientific research purposes. Requests for data access will be reviewed by the RGB TGCT Data Access Committee to ensure compliance with the informed consent provided by participants and applicable institutional and ethical regulations. Approved users may use the data only for the research project described in their request and must not attempt to re-identify study participants. Data sharing with third parties is not permitted without prior approval from the Data Access Committee.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001721 | Exome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000728463 | fastq.gz | 2.7 GB |
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| EGAF50000728464 | fastq.gz | 2.9 GB |
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| EGAF50000728465 | fastq.gz | 7.5 GB |
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| EGAF50000728466 | fastq.gz | 7.8 GB |
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| EGAF50000728467 | fastq.gz | 1.8 GB |
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| EGAF50000728468 | fastq.gz | 1.9 GB |
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| EGAF50000728469 | fastq.gz | 6.1 GB |
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| EGAF50000728470 | fastq.gz | 6.6 GB |
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| EGAF50000728471 | fastq.gz | 3.1 GB |
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| EGAF50000728472 | fastq.gz | 3.0 GB |
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| EGAF50000728473 | fastq.gz | 5.2 GB |
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| EGAF50000728474 | fastq.gz | 5.7 GB |
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| EGAF50000728475 | fastq.gz | 3.2 GB |
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| EGAF50000728476 | fastq.gz | 3.5 GB |
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| EGAF50000728477 | fastq.gz | 5.1 GB |
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| EGAF50000728478 | fastq.gz | 5.5 GB |
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| EGAF50000728479 | fastq.gz | 2.5 GB |
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| EGAF50000728480 | fastq.gz | 2.7 GB |
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| EGAF50000728481 | fastq.gz | 5.9 GB |
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| EGAF50000728482 | fastq.gz | 5.9 GB |
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| EGAF50000728483 | fastq.gz | 6.3 GB |
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| EGAF50000728484 | fastq.gz | 3.0 GB |
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| EGAF50000728485 | fastq.gz | 3.2 GB |
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| EGAF50000728486 | fastq.gz | 4.3 GB |
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| EGAF50000728487 | fastq.gz | 4.6 GB |
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| EGAF50000728488 | fastq.gz | 2.7 GB |
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| EGAF50000728489 | fastq.gz | 2.8 GB |
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| EGAF50000728490 | fastq.gz | 1.6 GB |
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| EGAF50000728491 | fastq.gz | 1.8 GB |
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| EGAF50000728492 | fastq.gz | 6.2 GB |
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| EGAF50000728493 | fastq.gz | 5.5 GB |
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| EGAF50000728494 | fastq.gz | 3.0 GB |
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| EGAF50000728495 | fastq.gz | 2.4 GB |
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| EGAF50000728496 | fastq.gz | 5.7 GB |
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| EGAF50000728497 | fastq.gz | 4.8 GB |
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| EGAF50000728498 | fastq.gz | 5.5 GB |
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| EGAF50000728499 | fastq.gz | 2.3 GB |
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| EGAF50000728500 | fastq.gz | 2.3 GB |
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| EGAF50000728501 | fastq.gz | 4.6 GB |
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| EGAF50000728502 | fastq.gz | 3.2 GB |
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| EGAF50000728503 | fastq.gz | 5.5 GB |
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| EGAF50000728504 | fastq.gz | 2.5 GB |
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| EGAF50000728505 | fastq.gz | 5.8 GB |
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| EGAF50000728506 | fastq.gz | 2.7 GB |
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| EGAF50000728507 | fastq.gz | 3.0 GB |
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| EGAF50000728508 | fastq.gz | 3.3 GB |
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| EGAF50000728509 | fastq.gz | 2.4 GB |
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| EGAF50000728510 | fastq.gz | 2.7 GB |
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| EGAF50000728511 | fastq.gz | 5.1 GB |
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| EGAF50000728512 | fastq.gz | 2.5 GB |
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| EGAF50000728513 | fastq.gz | 2.8 GB |
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| EGAF50000728514 | fastq.gz | 4.5 GB |
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| EGAF50000728515 | fastq.gz | 4.9 GB |
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| EGAF50000728516 | fastq.gz | 2.0 GB |
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| EGAF50000728517 | fastq.gz | 2.3 GB |
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| EGAF50000728518 | fastq.gz | 5.0 GB |
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| EGAF50000728519 | fastq.gz | 4.0 GB |
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| EGAF50000728520 | fastq.gz | 4.3 GB |
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| EGAF50000728521 | fastq.gz | 2.4 GB |
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| EGAF50000728522 | fastq.gz | 5.2 GB |
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| EGAF50000728523 | fastq.gz | 2.5 GB |
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| EGAF50000728524 | fastq.gz | 5.8 GB |
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| EGAF50000728525 | fastq.gz | 5.8 GB |
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| EGAF50000728526 | fastq.gz | 6.3 GB |
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| EGAF50000728527 | fastq.gz | 5.5 GB |
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| EGAF50000728528 | fastq.gz | 2.5 GB |
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| EGAF50000728529 | fastq.gz | 2.7 GB |
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| EGAF50000728530 | fastq.gz | 4.9 GB |
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| EGAF50000728531 | fastq.gz | 5.2 GB |
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| EGAF50000728532 | fastq.gz | 3.2 GB |
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| EGAF50000728533 | fastq.gz | 3.4 GB |
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| EGAF50000728534 | fastq.gz | 5.6 GB |
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| EGAF50000728535 | fastq.gz | 5.9 GB |
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| EGAF50000728536 | fastq.gz | 2.9 GB |
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| EGAF50000728537 | fastq.gz | 3.2 GB |
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| EGAF50000728538 | fastq.gz | 4.8 GB |
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| EGAF50000728539 | fastq.gz | 5.0 GB |
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| EGAF50000728540 | fastq.gz | 7.4 GB |
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| EGAF50000728541 | fastq.gz | 7.8 GB |
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| EGAF50000728542 | fastq.gz | 2.5 GB |
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| EGAF50000728543 | fastq.gz | 2.9 GB |
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| EGAF50000728544 | fastq.gz | 5.5 GB |
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| EGAF50000728545 | fastq.gz | 3.1 GB |
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| EGAF50000728546 | fastq.gz | 2.9 GB |
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| EGAF50000728547 | fastq.gz | 4.9 GB |
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| EGAF50000728548 | fastq.gz | 6.3 GB |
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| EGAF50000728549 | fastq.gz | 5.6 GB |
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| EGAF50000728550 | fastq.gz | 5.9 GB |
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| EGAF50000728551 | fastq.gz | 3.1 GB |
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| EGAF50000728552 | fastq.gz | 3.3 GB |
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| EGAF50000728553 | fastq.gz | 6.0 GB |
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| EGAF50000728554 | fastq.gz | 2.8 GB |
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| EGAF50000728555 | fastq.gz | 3.1 GB |
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| EGAF50000728556 | fastq.gz | 5.4 GB |
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| EGAF50000728557 | fastq.gz | 5.8 GB |
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| EGAF50000728558 | fastq.gz | 4.3 GB |
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| EGAF50000728559 | fastq.gz | 4.7 GB |
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| EGAF50000728560 | fastq.gz | 2.5 GB |
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| EGAF50000728561 | fastq.gz | 2.6 GB |
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| EGAF50000728562 | fastq.gz | 2.5 GB |
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| EGAF50000728563 | fastq.gz | 2.5 GB |
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| EGAF50000728564 | fastq.gz | 2.6 GB |
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| EGAF50000728565 | fastq.gz | 2.8 GB |
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| EGAF50000728566 | fastq.gz | 4.2 GB |
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| EGAF50000728567 | fastq.gz | 4.5 GB |
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| EGAF50000728568 | fastq.gz | 3.0 GB |
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| EGAF50000728569 | fastq.gz | 2.5 GB |
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| EGAF50000728570 | fastq.gz | 3.5 GB |
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| EGAF50000728571 | fastq.gz | 3.9 GB |
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| EGAF50000728572 | fastq.gz | 4.1 GB |
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| EGAF50000728573 | fastq.gz | 5.9 GB |
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| EGAF50000728574 | fastq.gz | 5.5 GB |
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| EGAF50000728575 | fastq.gz | 5.0 GB |
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| EGAF50000728576 | fastq.gz | 5.4 GB |
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| EGAF50000728577 | fastq.gz | 1.7 GB |
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| EGAF50000728578 | fastq.gz | 1.8 GB |
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| EGAF50000728579 | fastq.gz | 2.7 GB |
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| EGAF50000728580 | fastq.gz | 2.9 GB |
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| EGAF50000728581 | fastq.gz | 5.8 GB |
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| EGAF50000728582 | fastq.gz | 6.3 GB |
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| EGAF50000728583 | fastq.gz | 2.3 GB |
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| EGAF50000728584 | fastq.gz | 2.5 GB |
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| EGAF50000728585 | fastq.gz | 5.0 GB |
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| EGAF50000728586 | fastq.gz | 5.3 GB |
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| EGAF50000728587 | fastq.gz | 2.9 GB |
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| EGAF50000728588 | fastq.gz | 3.0 GB |
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| EGAF50000728589 | fastq.gz | 4.6 GB |
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| EGAF50000728590 | fastq.gz | 5.0 GB |
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| EGAF50000728591 | fastq.gz | 5.5 GB |
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| EGAF50000728592 | fastq.gz | 5.9 GB |
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| EGAF50000728593 | fastq.gz | 3.3 GB |
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| EGAF50000728594 | fastq.gz | 3.6 GB |
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| EGAF50000728595 | fastq.gz | 2.5 GB |
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| EGAF50000728596 | fastq.gz | 4.1 GB |
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| EGAF50000728597 | fastq.gz | 4.2 GB |
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| EGAF50000728598 | fastq.gz | 3.2 GB |
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| EGAF50000728599 | fastq.gz | 3.4 GB |
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| EGAF50000728600 | fastq.gz | 5.4 GB |
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| EGAF50000728601 | fastq.gz | 5.3 GB |
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| EGAF50000728602 | fastq.gz | 4.4 GB |
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| EGAF50000728603 | fastq.gz | 4.7 GB |
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| EGAF50000728604 | fastq.gz | 5.7 GB |
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| EGAF50000728605 | fastq.gz | 6.1 GB |
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| EGAF50000728606 | fastq.gz | 2.5 GB |
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| EGAF50000728607 | fastq.gz | 2.6 GB |
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| EGAF50000728608 | fastq.gz | 5.7 GB |
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| EGAF50000728609 | fastq.gz | 6.2 GB |
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| EGAF50000728610 | fastq.gz | 1.9 GB |
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| EGAF50000728611 | fastq.gz | 2.0 GB |
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| EGAF50000728612 | fastq.gz | 4.7 GB |
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| EGAF50000728613 | fastq.gz | 5.1 GB |
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| EGAF50000728614 | fastq.gz | 2.6 GB |
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| EGAF50000728615 | fastq.gz | 5.1 GB |
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| EGAF50000728616 | fastq.gz | 5.5 GB |
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| EGAF50000728617 | fastq.gz | 3.0 GB |
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| EGAF50000728618 | fastq.gz | 3.2 GB |
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| 156 Files (637.8 GB) | ||||