RNA sequencing data of pediatric hyperdiploid acute lymphoblastic leukemia (set 3)
The dataset includes RNA sequencing FASTQ files from diagnostic tumor samples of five hyperdiploid ALL patients (ALLT-364, ALLT-367, ALLT-368, ALLT-371, ALLT-377). NEBNext Ultra Directional RNA Library Prep Kit (New England Biolabs) was used in library preparation, and TruSeq Stranded Total RNA Library Prep (Illumina) kit was utilized for rRNA removal. The diagnostic tumor samples were sequenced using Illumina Novaseq 6000, and the target sequencing depth was 21 Gb per sample.
- 18/05/2026
- 5 samples
- DAC: EGAC00001001551
- Technology: Illumina NovaSeq 6000
Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital
Data will be shared if the proposed project falls within the patient/caretaker consent
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001802 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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| EGAF50000808642 | fq.gz | 5.9 GB |
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| EGAF50000808643 | fq.gz | 5.8 GB |
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| EGAF50000808644 | fq.gz | 6.3 GB |
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| EGAF50000808645 | fq.gz | 5.6 GB |
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| EGAF50000808648 | fq.gz | 5.5 GB |
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| EGAF50000808649 | fq.gz | 6.5 GB |
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| EGAF50000808650 | fq.gz | 6.9 GB |
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| EGAF50000808651 | fq.gz | 5.9 GB |
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| EGAF50000808652 | fq.gz | 6.3 GB |
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| EGAF50000808653 | fq.gz | 5.5 GB |
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| 10 Files (60.2 GB) | ||||