About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA sequencing data of pediatric B-other acute lymphoblastic leukemia (set 1)

The dataset includes RNA sequencing FASTQ files from diagnostic tumor samples of four B-other ALL patients (ALLT-314, ALLT-319, ALLT-327, ALLT-334), and from relapse sample of one B-other ALL patient (ALLT-316) . NEBNext Ultra Directional RNA Library Prep Kit (New England Biolabs) was used in library preparation, and Globin-Zero Gold rRNA Removal Kit (Illumina) was utilized for rRNA removal. The diagnostic and relapse tumor samples were sequenced using Illumina Novaseq 6000, and the target sequencing depth was 21 Gb per sample.

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Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital

Data will be shared if the proposed project falls within the patient/caretaker consent

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001803 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000808654 fq.gz 8.1 GB
EGAF50000808657 fq.gz 7.4 GB
EGAF50000808658 fq.gz 7.1 GB
EGAF50000808666 fq.gz 5.5 GB
EGAF50000808667 fq.gz 6.2 GB
EGAF50000808683 fq.gz 6.1 GB
EGAF50000808693 fq.gz 7.7 GB
EGAF50000808694 fq.gz 8.5 GB
EGAF50000808695 fq.gz 5.6 GB
EGAF50000808696 fq.gz 6.1 GB
10 Files (68.4 GB)