About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA sequencing data of pediatric B-other acute lymphoblastic leukemia (set 6)

The dataset includes RNA sequencing FASTQ files from diagnostic tumor samples of three B-other ALL patients (ALLT-311, ALLK-131, ALLK-138). Novogene's internal method was used in directional library preparation including rRNA removal. The diagnostic tumor samples were sequenced using Illumina Novaseq X Plus, and the target sequencing depth was 21 Gb.

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Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital

Data will be shared if the proposed project falls within the patient/caretaker consent

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001803 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000808655 fq.gz 4.1 GB
EGAF50000808656 fq.gz 4.2 GB
EGAF50000808664 fq.gz 2.1 GB
EGAF50000808665 fq.gz 3.4 GB
EGAF50000808681 fq.gz 6.6 GB
EGAF50000808682 fq.gz 6.7 GB
EGAF50000808688 fq.gz 2.1 GB
EGAF50000808701 fq.gz 3.4 GB
8 Files (32.5 GB)