About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Progressive supranuclear palsy - bulk RNA seq of prefrontal cortex

Dataset corresponding to the bulk RNA-seq dataset from prefrontal cortex for a total of N=42 samples. Tissue samples correspond to donors with pathologically confirmed progressive supranuclear palsy. RNA-seq was carried out using ribosomal depletion. Dataset contains paired fastq files, sample metadata and downstream quantification files. Quantification was performed with salmon v1.3.0 with Gencode 35 (GRCh38.p13).

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000020
version: 2021-02-23

collaboration required

This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Haukeland University Hospital Data Access Policy for ParkOme: omics of Parkinson’s disease and related disorders datasets archived in Federated EGA Norway

1. Data Access Committee A Data Access Committee (DAC) is a body of one or more named individuals who are responsible for data release to external requesters based on consent and/or National Research Ethics terms. Each dataset submitted by Haukeland University Hospital for archival and controlled access sharing in Federated EGA Norway, has a DAC appointed by Haukeland University Hospital to govern controlled access to the dataset according to this Data Access Policy. Multiple datasets may be affiliated to a single DAC. Haukeland University Hospital as an institution has the overall data controller responsibility, and has appointed a DAC based on proper internal procedures that ensures involvement of institutional functions such as Data Protection Officer, legal control, etc. 2. Data use conditions To advise any would-be requester on how the data can be used, Data Use Ontology codes (DUO) is associated to each dataset, providing the requester more insights into which terms for sharing and use of the data that applies, and that needs to be addressed as part of the communication with the DAC in a data access request. No access to an Haukeland University Hospital dataset deposited in FEGA Norway can be granted to a requester before all applicable conditions and requirements for the use and management of the data have been agreed upon in a signed Data Access Agreement. 3. Data Access Agreement The Data Access Agreement (DAA) will include requirements specific for both the dataset and the management of the data in the hands of the requester applying for access, and will thus be an individual DAA for each case of granted access to a dataset. As a rule, a DAA for an Haukeland University Hospital dataset will take the form of a Data Transfer Agreement, where the requester will commit to take on responsibilities and duties as a data controller. 4. Processing of requests for access The overall data access approval process at Haukeland University Hospital can be summarized as follows: ● DAC for an Haukeland University Hospital dataset is contacted by a potential data requester ● DAC continues communication with requester to understand the purpose of use, i.e. research setting the dataset is envisioned for by requester, to identify if data sharing is possible directly under current conditions for the dataset, or actions such as re-consenting is needed and desirable to accommodate the proposed research setting/data use. ● A Data Access Agreement is jointly formulated and agreed upon, with the DAC following internal Haukeland University Hospital procedure to include the Data Protection Officer and Division for research support. ● When a completed DAA has been signed between the parties, and archived at Haukeland University Hospital, the DAC will instruct the FEGA Norway node to release the data to the requester.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001815 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000801448 fastq.gz 7.3 GB
Federated EGA
EGAF50000801449 fastq.gz 7.0 GB
Federated EGA
EGAF50000801450 fastq.gz 6.1 GB
Federated EGA
EGAF50000801451 fastq.gz 6.0 GB
Federated EGA
EGAF50000801452 fastq.gz 6.3 GB
Federated EGA
EGAF50000801453 fastq.gz 6.2 GB
Federated EGA
EGAF50000801454 fastq.gz 7.8 GB
Federated EGA
EGAF50000801455 fastq.gz 8.1 GB
Federated EGA
EGAF50000801456 fastq.gz 7.3 GB
Federated EGA
EGAF50000801457 fastq.gz 7.1 GB
Federated EGA
EGAF50000801458 fastq.gz 8.9 GB
Federated EGA
EGAF50000801459 fastq.gz 8.6 GB
Federated EGA
EGAF50000801460 fastq.gz 7.6 GB
Federated EGA
EGAF50000801461 fastq.gz 7.5 GB
Federated EGA
EGAF50000801462 fastq.gz 7.6 GB
Federated EGA
EGAF50000801463 fastq.gz 7.3 GB
Federated EGA
EGAF50000801464 fastq.gz 7.7 GB
Federated EGA
EGAF50000801465 fastq.gz 7.4 GB
Federated EGA
EGAF50000801466 fastq.gz 8.6 GB
Federated EGA
EGAF50000801467 fastq.gz 8.3 GB
Federated EGA
EGAF50000801468 fastq.gz 7.8 GB
Federated EGA
EGAF50000801469 fastq.gz 7.5 GB
Federated EGA
EGAF50000801470 fastq.gz 7.2 GB
Federated EGA
EGAF50000801471 fastq.gz 7.1 GB
Federated EGA
EGAF50000801472 fastq.gz 7.7 GB
Federated EGA
EGAF50000801473 fastq.gz 7.4 GB
Federated EGA
EGAF50000801474 fastq.gz 8.5 GB
Federated EGA
EGAF50000801475 fastq.gz 8.2 GB
Federated EGA
EGAF50000801476 fastq.gz 8.4 GB
Federated EGA
EGAF50000801477 fastq.gz 8.1 GB
Federated EGA
EGAF50000801478 fastq.gz 7.5 GB
Federated EGA
EGAF50000801479 fastq.gz 7.7 GB
Federated EGA
EGAF50000801480 fastq.gz 8.3 GB
Federated EGA
EGAF50000801481 fastq.gz 8.1 GB
Federated EGA
EGAF50000801482 fastq.gz 7.6 GB
Federated EGA
EGAF50000801483 fastq.gz 7.5 GB
Federated EGA
EGAF50000801484 fastq.gz 7.2 GB
Federated EGA
EGAF50000801485 fastq.gz 7.4 GB
Federated EGA
EGAF50000801486 fastq.gz 6.9 GB
Federated EGA
EGAF50000801487 fastq.gz 6.8 GB
Federated EGA
EGAF50000801488 fastq.gz 7.5 GB
Federated EGA
EGAF50000801489 fastq.gz 7.1 GB
Federated EGA
EGAF50000801490 fastq.gz 7.4 GB
Federated EGA
EGAF50000801491 fastq.gz 7.3 GB
Federated EGA
EGAF50000801492 fastq.gz 7.7 GB
Federated EGA
EGAF50000801493 fastq.gz 7.4 GB
Federated EGA
EGAF50000801494 fastq.gz 7.5 GB
Federated EGA
EGAF50000801495 fastq.gz 7.7 GB
Federated EGA
EGAF50000801496 fastq.gz 6.6 GB
Federated EGA
EGAF50000801497 fastq.gz 6.3 GB
Federated EGA
EGAF50000801498 fastq.gz 7.8 GB
Federated EGA
EGAF50000801499 fastq.gz 7.5 GB
Federated EGA
EGAF50000801500 fastq.gz 6.3 GB
Federated EGA
EGAF50000801501 fastq.gz 6.5 GB
Federated EGA
EGAF50000801544 fastq.gz 7.6 GB
Federated EGA
EGAF50000801545 fastq.gz 7.4 GB
Federated EGA
EGAF50000801546 fastq.gz 7.2 GB
Federated EGA
EGAF50000801547 fastq.gz 7.4 GB
Federated EGA
EGAF50000801594 fastq.gz 6.9 GB
Federated EGA
EGAF50000801595 fastq.gz 6.7 GB
Federated EGA
EGAF50000802028 fastq.gz 6.3 GB
Federated EGA
EGAF50000802029 fastq.gz 6.3 GB
Federated EGA
EGAF50000802040 fastq.gz 8.6 GB
Federated EGA
EGAF50000802041 fastq.gz 8.4 GB
Federated EGA
EGAF50000802048 fastq.gz 8.4 GB
Federated EGA
EGAF50000802049 fastq.gz 8.1 GB
Federated EGA
EGAF50000802092 fastq.gz 9.9 GB
Federated EGA
EGAF50000802093 fastq.gz 9.7 GB
Federated EGA
EGAF50000802152 fastq.gz 9.2 GB
Federated EGA
EGAF50000802153 fastq.gz 8.9 GB
Federated EGA
EGAF50000806929 fastq.gz 6.6 GB
Federated EGA
EGAF50000806930 fastq.gz 6.4 GB
Federated EGA
EGAF50000806931 fastq.gz 5.3 GB
Federated EGA
EGAF50000806932 fastq.gz 5.2 GB
Federated EGA
EGAF50000806935 fastq.gz 6.8 GB
Federated EGA
EGAF50000806936 fastq.gz 6.5 GB
Federated EGA
EGAF50000807889 fastq.gz 7.3 GB
Federated EGA
EGAF50000807890 fastq.gz 7.2 GB
Federated EGA
EGAF50000807891 fastq.gz 7.3 GB
Federated EGA
EGAF50000807892 fastq.gz 7.1 GB
Federated EGA
EGAF50000807893 fastq.gz 7.6 GB
Federated EGA
EGAF50000807894 fastq.gz 7.5 GB
Federated EGA
EGAF50000807901 fastq.gz 6.0 GB
Federated EGA
EGAF50000807902 fastq.gz 5.9 GB
Federated EGA
EGAF50000807981 eu_files_PSP.tar.gz 143.1 MB
Federated EGA
EGAF50000808357 csv.gz 1.1 kB
Federated EGA
86 Files (622.1 GB)