Multiple system atrophy - bulk RNA seq of prefrontal cortex

Dataset corresponding to the bulk RNA-seq dataset from prefrontal cortex for a total of N=35 samples. Tissue samples correspond to donors with pathologically confirmed multiple system atrophy. RNA-seq was carried out using ribosomal depletion. Dataset contains paired fastq files, sample metadata and downstream quantification files. Quantification was performed with salmon v1.3.0 with Gencode 35 (GRCh38.p13). N=6 samples are overlapping with EGAS50000000301.

08/05/2026
35 samples
DAC: EGAC50000000193
Technology: Illumina HiSeq 2500

Access Policy1 Study Files

Metadata

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000020
version: 2021-02-23

collaboration required

This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Haukeland University Hospital Data Access Policy for ParkOme: omics of Parkinson’s disease and related disorders datasets archived in Federated EGA Norway

1. Data Access Committee A Data Access Committee (DAC) is a body of one or more named individuals who are responsible for data release to external requesters based on consent and/or National Research Ethics terms. Each dataset submitted by Haukeland University Hospital for archival and controlled access sharing in Federated EGA Norway, has a DAC appointed by Haukeland University Hospital to govern controlled access to the dataset according to this Data Access Policy. Multiple datasets may be affiliated to a single DAC. Haukeland University Hospital as an institution has the overall data controller responsibility, and has appointed a DAC based on proper internal procedures that ensures involvement of institutional functions such as Data Protection Officer, legal control, etc. 2. Data use conditions To advise any would-be requester on how the data can be used, Data Use Ontology codes (DUO) is associated to each dataset, providing the requester more insights into which terms for sharing and use of the data that applies, and that needs to be addressed as part of the communication with the DAC in a data access request. No access to an Haukeland University Hospital dataset deposited in FEGA Norway can be granted to a requester before all applicable conditions and requirements for the use and management of the data have been agreed upon in a signed Data Access Agreement. 3. Data Access Agreement The Data Access Agreement (DAA) will include requirements specific for both the dataset and the management of the data in the hands of the requester applying for access, and will thus be an individual DAA for each case of granted access to a dataset. As a rule, a DAA for an Haukeland University Hospital dataset will take the form of a Data Transfer Agreement, where the requester will commit to take on responsibilities and duties as a data controller. 4. Processing of requests for access The overall data access approval process at Haukeland University Hospital can be summarized as follows: ● DAC for an Haukeland University Hospital dataset is contacted by a potential data requester ● DAC continues communication with requester to understand the purpose of use, i.e. research setting the dataset is envisioned for by requester, to identify if data sharing is possible directly under current conditions for the dataset, or actions such as re-consenting is needed and desirable to accommodate the proposed research setting/data use. ● A Data Access Agreement is jointly formulated and agreed upon, with the DAC following internal Haukeland University Hospital procedure to include the Data Protection Officer and Division for research support. ● When a completed DAA has been signed between the parties, and archived at Haukeland University Hospital, the DAC will instruct the FEGA Norway node to release the data to the requester.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS50000001815	Comparative transcriptomics reveal molecular convergence and divergence in parkinsonian disorders	Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Located in i
EGAF50000099459	fastq.gz	6.6 GB	Federated EGA
EGAF50000099460	fastq.gz	6.8 GB	Federated EGA
EGAF50000099461	fastq.gz	7.0 GB	Federated EGA
EGAF50000099462	fastq.gz	7.3 GB	Federated EGA
EGAF50000099463	fastq.gz	7.6 GB	Federated EGA
EGAF50000099464	fastq.gz	7.8 GB	Federated EGA
EGAF50000099465	fastq.gz	9.2 GB	Federated EGA
EGAF50000099466	fastq.gz	9.6 GB	Federated EGA
EGAF50000099475	fastq.gz	7.2 GB	Federated EGA
EGAF50000099476	fastq.gz	7.4 GB	Federated EGA
EGAF50000099479	fastq.gz	7.9 GB	Federated EGA
EGAF50000099480	fastq.gz	8.2 GB	Federated EGA
EGAF50000801506	fastq.gz	7.6 GB	Federated EGA
EGAF50000801507	fastq.gz	7.9 GB	Federated EGA
EGAF50000801510	fastq.gz	6.8 GB	Federated EGA
EGAF50000801511	fastq.gz	6.9 GB	Federated EGA
EGAF50000801512	fastq.gz	7.9 GB	Federated EGA
EGAF50000801513	fastq.gz	7.7 GB	Federated EGA
EGAF50000801514	fastq.gz	6.2 GB	Federated EGA
EGAF50000801515	fastq.gz	6.1 GB	Federated EGA
EGAF50000801516	fastq.gz	8.2 GB	Federated EGA
EGAF50000801517	fastq.gz	8.5 GB	Federated EGA
EGAF50000801518	fastq.gz	7.0 GB	Federated EGA
EGAF50000801519	fastq.gz	7.2 GB	Federated EGA
EGAF50000801520	fastq.gz	8.6 GB	Federated EGA
EGAF50000801521	fastq.gz	8.3 GB	Federated EGA
EGAF50000801522	fastq.gz	6.7 GB	Federated EGA
EGAF50000801523	fastq.gz	6.9 GB	Federated EGA
EGAF50000801524	fastq.gz	7.6 GB	Federated EGA
EGAF50000801525	fastq.gz	7.3 GB	Federated EGA
EGAF50000801526	fastq.gz	8.0 GB	Federated EGA
EGAF50000801527	fastq.gz	7.7 GB	Federated EGA
EGAF50000801528	fastq.gz	6.9 GB	Federated EGA
EGAF50000801529	fastq.gz	6.7 GB	Federated EGA
EGAF50000801530	fastq.gz	6.5 GB	Federated EGA
EGAF50000801531	fastq.gz	6.3 GB	Federated EGA
EGAF50000801532	fastq.gz	6.7 GB	Federated EGA
EGAF50000801533	fastq.gz	6.6 GB	Federated EGA
EGAF50000801534	fastq.gz	7.7 GB	Federated EGA
EGAF50000801535	fastq.gz	7.7 GB	Federated EGA
EGAF50000801536	fastq.gz	8.4 GB	Federated EGA
EGAF50000801537	fastq.gz	8.8 GB	Federated EGA
EGAF50000801538	fastq.gz	6.8 GB	Federated EGA
EGAF50000801539	fastq.gz	6.6 GB	Federated EGA
EGAF50000801540	fastq.gz	7.2 GB	Federated EGA
EGAF50000801541	fastq.gz	7.1 GB	Federated EGA
EGAF50000801542	fastq.gz	6.9 GB	Federated EGA
EGAF50000801543	fastq.gz	6.7 GB	Federated EGA
EGAF50000801548	fastq.gz	7.4 GB	Federated EGA
EGAF50000801549	fastq.gz	7.3 GB	Federated EGA
EGAF50000801550	fastq.gz	7.4 GB	Federated EGA
EGAF50000801551	fastq.gz	7.2 GB	Federated EGA
EGAF50000801552	fastq.gz	7.3 GB	Federated EGA
EGAF50000801553	fastq.gz	7.0 GB	Federated EGA
EGAF50000801554	fastq.gz	6.4 GB	Federated EGA
EGAF50000801555	fastq.gz	6.7 GB	Federated EGA
EGAF50000801556	fastq.gz	8.1 GB	Federated EGA
EGAF50000801557	fastq.gz	8.3 GB	Federated EGA
EGAF50000801562	fastq.gz	5.8 GB	Federated EGA
EGAF50000801563	fastq.gz	6.0 GB	Federated EGA
EGAF50000801820	fastq.gz	6.6 GB	Federated EGA
EGAF50000801821	fastq.gz	6.7 GB	Federated EGA
EGAF50000807895	fastq.gz	7.2 GB	Federated EGA
EGAF50000807896	fastq.gz	6.8 GB	Federated EGA
EGAF50000807897	fastq.gz	8.0 GB	Federated EGA
EGAF50000807898	fastq.gz	7.8 GB	Federated EGA
EGAF50000807899	fastq.gz	6.4 GB	Federated EGA
EGAF50000807900	fastq.gz	6.2 GB	Federated EGA
EGAF50000807957	fastq.gz	6.9 GB	Federated EGA
EGAF50000807958	fastq.gz	6.9 GB	Federated EGA
EGAF50000807983	eu_files_MSA.tar.gz	119.4 MB	Federated EGA
EGAF50000808355	csv.gz	936 Bytes	Federated EGA
72 Files (510.2 GB)