About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Alzheimer's disease - bulk RNA seq of prefrontal cortex

Dataset corresponding to the bulk RNA-seq dataset from prefrontal cortex for a total of N=72 samples. Tissue samples correspond to donors with pathologically confirmed Alzheimer's disease. RNA-seq was carried out using ribosomal depletion. Dataset contains paired fastq files, sample metadata and downstream quantification files. Quantification was performed with salmon v1.3.0 with Gencode 35 (GRCh38.p13).

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000020
version: 2021-02-23

collaboration required

This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Haukeland University Hospital Data Access Policy for ParkOme: omics of Parkinson’s disease and related disorders datasets archived in Federated EGA Norway

1. Data Access Committee A Data Access Committee (DAC) is a body of one or more named individuals who are responsible for data release to external requesters based on consent and/or National Research Ethics terms. Each dataset submitted by Haukeland University Hospital for archival and controlled access sharing in Federated EGA Norway, has a DAC appointed by Haukeland University Hospital to govern controlled access to the dataset according to this Data Access Policy. Multiple datasets may be affiliated to a single DAC. Haukeland University Hospital as an institution has the overall data controller responsibility, and has appointed a DAC based on proper internal procedures that ensures involvement of institutional functions such as Data Protection Officer, legal control, etc. 2. Data use conditions To advise any would-be requester on how the data can be used, Data Use Ontology codes (DUO) is associated to each dataset, providing the requester more insights into which terms for sharing and use of the data that applies, and that needs to be addressed as part of the communication with the DAC in a data access request. No access to an Haukeland University Hospital dataset deposited in FEGA Norway can be granted to a requester before all applicable conditions and requirements for the use and management of the data have been agreed upon in a signed Data Access Agreement. 3. Data Access Agreement The Data Access Agreement (DAA) will include requirements specific for both the dataset and the management of the data in the hands of the requester applying for access, and will thus be an individual DAA for each case of granted access to a dataset. As a rule, a DAA for an Haukeland University Hospital dataset will take the form of a Data Transfer Agreement, where the requester will commit to take on responsibilities and duties as a data controller. 4. Processing of requests for access The overall data access approval process at Haukeland University Hospital can be summarized as follows: ● DAC for an Haukeland University Hospital dataset is contacted by a potential data requester ● DAC continues communication with requester to understand the purpose of use, i.e. research setting the dataset is envisioned for by requester, to identify if data sharing is possible directly under current conditions for the dataset, or actions such as re-consenting is needed and desirable to accommodate the proposed research setting/data use. ● A Data Access Agreement is jointly formulated and agreed upon, with the DAC following internal Haukeland University Hospital procedure to include the Data Protection Officer and Division for research support. ● When a completed DAA has been signed between the parties, and archived at Haukeland University Hospital, the DAC will instruct the FEGA Norway node to release the data to the requester.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001815 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000795865 fastq.gz 7.9 GB
Federated EGA
EGAF50000795866 fastq.gz 8.1 GB
Federated EGA
EGAF50000795867 fastq.gz 5.8 GB
Federated EGA
EGAF50000795868 fastq.gz 5.9 GB
Federated EGA
EGAF50000801596 fastq.gz 7.0 GB
Federated EGA
EGAF50000801597 fastq.gz 7.2 GB
Federated EGA
EGAF50000801598 fastq.gz 8.0 GB
Federated EGA
EGAF50000801599 fastq.gz 7.7 GB
Federated EGA
EGAF50000801600 fastq.gz 6.2 GB
Federated EGA
EGAF50000801601 fastq.gz 6.0 GB
Federated EGA
EGAF50000801602 fastq.gz 7.7 GB
Federated EGA
EGAF50000801603 fastq.gz 7.5 GB
Federated EGA
EGAF50000801604 fastq.gz 7.5 GB
Federated EGA
EGAF50000801605 fastq.gz 7.3 GB
Federated EGA
EGAF50000801952 fastq.gz 7.8 GB
Federated EGA
EGAF50000801953 fastq.gz 7.6 GB
Federated EGA
EGAF50000801956 fastq.gz 7.2 GB
Federated EGA
EGAF50000801957 fastq.gz 7.0 GB
Federated EGA
EGAF50000802016 fastq.gz 6.5 GB
Federated EGA
EGAF50000802017 fastq.gz 6.2 GB
Federated EGA
EGAF50000802130 fastq.gz 7.6 GB
Federated EGA
EGAF50000802131 fastq.gz 7.4 GB
Federated EGA
EGAF50000802268 fastq.gz 5.9 GB
Federated EGA
EGAF50000802269 fastq.gz 5.7 GB
Federated EGA
EGAF50000802278 fastq.gz 6.1 GB
Federated EGA
EGAF50000802279 fastq.gz 5.9 GB
Federated EGA
EGAF50000802286 fastq.gz 5.5 GB
Federated EGA
EGAF50000802287 fastq.gz 5.8 GB
Federated EGA
EGAF50000806285 fastq.gz 5.9 GB
Federated EGA
EGAF50000806286 fastq.gz 5.8 GB
Federated EGA
EGAF50000806295 fastq.gz 6.0 GB
Federated EGA
EGAF50000806296 fastq.gz 6.2 GB
Federated EGA
EGAF50000806321 fastq.gz 6.7 GB
Federated EGA
EGAF50000806322 fastq.gz 6.9 GB
Federated EGA
EGAF50000806323 fastq.gz 6.9 GB
Federated EGA
EGAF50000806324 fastq.gz 7.0 GB
Federated EGA
EGAF50000806339 fastq.gz 5.8 GB
Federated EGA
EGAF50000806340 fastq.gz 5.6 GB
Federated EGA
EGAF50000806359 fastq.gz 6.6 GB
Federated EGA
EGAF50000806360 fastq.gz 6.8 GB
Federated EGA
EGAF50000806363 fastq.gz 5.5 GB
Federated EGA
EGAF50000806364 fastq.gz 5.2 GB
Federated EGA
EGAF50000806375 fastq.gz 6.0 GB
Federated EGA
EGAF50000806376 fastq.gz 6.3 GB
Federated EGA
EGAF50000806379 fastq.gz 5.5 GB
Federated EGA
EGAF50000806380 fastq.gz 5.4 GB
Federated EGA
EGAF50000806385 fastq.gz 6.7 GB
Federated EGA
EGAF50000806386 fastq.gz 7.0 GB
Federated EGA
EGAF50000806389 fastq.gz 5.6 GB
Federated EGA
EGAF50000806390 fastq.gz 5.8 GB
Federated EGA
EGAF50000806391 fastq.gz 6.9 GB
Federated EGA
EGAF50000806392 fastq.gz 7.2 GB
Federated EGA
EGAF50000806393 fastq.gz 5.3 GB
Federated EGA
EGAF50000806394 fastq.gz 5.5 GB
Federated EGA
EGAF50000806399 fastq.gz 7.2 GB
Federated EGA
EGAF50000806400 fastq.gz 7.6 GB
Federated EGA
EGAF50000806401 fastq.gz 6.5 GB
Federated EGA
EGAF50000806402 fastq.gz 6.9 GB
Federated EGA
EGAF50000806403 fastq.gz 6.3 GB
Federated EGA
EGAF50000806404 fastq.gz 6.5 GB
Federated EGA
EGAF50000806407 fastq.gz 5.1 GB
Federated EGA
EGAF50000806408 fastq.gz 5.3 GB
Federated EGA
EGAF50000806409 fastq.gz 6.0 GB
Federated EGA
EGAF50000806410 fastq.gz 6.2 GB
Federated EGA
EGAF50000806423 fastq.gz 5.5 GB
Federated EGA
EGAF50000806424 fastq.gz 5.8 GB
Federated EGA
EGAF50000806427 fastq.gz 7.1 GB
Federated EGA
EGAF50000806428 fastq.gz 7.6 GB
Federated EGA
EGAF50000806429 fastq.gz 6.3 GB
Federated EGA
EGAF50000806430 fastq.gz 6.6 GB
Federated EGA
EGAF50000806431 fastq.gz 7.3 GB
Federated EGA
EGAF50000806432 fastq.gz 7.7 GB
Federated EGA
EGAF50000806435 fastq.gz 6.3 GB
Federated EGA
EGAF50000806436 fastq.gz 6.5 GB
Federated EGA
EGAF50000806443 fastq.gz 5.1 GB
Federated EGA
EGAF50000806444 fastq.gz 5.3 GB
Federated EGA
EGAF50000806449 fastq.gz 6.4 GB
Federated EGA
EGAF50000806450 fastq.gz 6.6 GB
Federated EGA
EGAF50000806457 fastq.gz 6.5 GB
Federated EGA
EGAF50000806458 fastq.gz 7.0 GB
Federated EGA
EGAF50000806469 fastq.gz 5.6 GB
Federated EGA
EGAF50000806470 fastq.gz 5.9 GB
Federated EGA
EGAF50000806491 fastq.gz 6.2 GB
Federated EGA
EGAF50000806492 fastq.gz 6.5 GB
Federated EGA
EGAF50000806535 fastq.gz 6.3 GB
Federated EGA
EGAF50000806536 fastq.gz 6.7 GB
Federated EGA
EGAF50000806549 fastq.gz 6.1 GB
Federated EGA
EGAF50000806550 fastq.gz 6.3 GB
Federated EGA
EGAF50000806563 fastq.gz 6.7 GB
Federated EGA
EGAF50000806564 fastq.gz 7.1 GB
Federated EGA
EGAF50000806577 fastq.gz 6.9 GB
Federated EGA
EGAF50000806578 fastq.gz 6.7 GB
Federated EGA
EGAF50000806583 fastq.gz 6.7 GB
Federated EGA
EGAF50000806584 fastq.gz 6.5 GB
Federated EGA
EGAF50000806589 fastq.gz 6.9 GB
Federated EGA
EGAF50000806590 fastq.gz 7.3 GB
Federated EGA
EGAF50000806593 fastq.gz 4.8 GB
Federated EGA
EGAF50000806594 fastq.gz 4.9 GB
Federated EGA
EGAF50000806609 fastq.gz 4.9 GB
Federated EGA
EGAF50000806610 fastq.gz 5.1 GB
Federated EGA
EGAF50000806613 fastq.gz 7.9 GB
Federated EGA
EGAF50000806614 fastq.gz 7.7 GB
Federated EGA
EGAF50000806619 fastq.gz 6.0 GB
Federated EGA
EGAF50000806620 fastq.gz 6.2 GB
Federated EGA
EGAF50000806625 fastq.gz 5.0 GB
Federated EGA
EGAF50000806626 fastq.gz 5.1 GB
Federated EGA
EGAF50000806675 fastq.gz 6.5 GB
Federated EGA
EGAF50000806676 fastq.gz 6.9 GB
Federated EGA
EGAF50000806683 fastq.gz 6.0 GB
Federated EGA
EGAF50000806684 fastq.gz 6.3 GB
Federated EGA
EGAF50000806701 fastq.gz 6.6 GB
Federated EGA
EGAF50000806702 fastq.gz 7.0 GB
Federated EGA
EGAF50000806715 fastq.gz 6.2 GB
Federated EGA
EGAF50000806716 fastq.gz 6.5 GB
Federated EGA
EGAF50000806721 fastq.gz 6.0 GB
Federated EGA
EGAF50000806722 fastq.gz 5.6 GB
Federated EGA
EGAF50000806723 fastq.gz 7.3 GB
Federated EGA
EGAF50000806724 fastq.gz 7.5 GB
Federated EGA
EGAF50000806733 fastq.gz 7.6 GB
Federated EGA
EGAF50000806734 fastq.gz 8.0 GB
Federated EGA
EGAF50000806735 fastq.gz 5.4 GB
Federated EGA
EGAF50000806736 fastq.gz 5.2 GB
Federated EGA
EGAF50000806757 fastq.gz 6.5 GB
Federated EGA
EGAF50000806758 fastq.gz 6.7 GB
Federated EGA
EGAF50000806793 fastq.gz 6.9 GB
Federated EGA
EGAF50000806794 fastq.gz 6.6 GB
Federated EGA
EGAF50000806801 fastq.gz 6.2 GB
Federated EGA
EGAF50000806802 fastq.gz 6.5 GB
Federated EGA
EGAF50000806819 fastq.gz 5.7 GB
Federated EGA
EGAF50000806820 fastq.gz 5.9 GB
Federated EGA
EGAF50000806847 fastq.gz 7.2 GB
Federated EGA
EGAF50000806848 fastq.gz 7.5 GB
Federated EGA
EGAF50000806851 fastq.gz 5.5 GB
Federated EGA
EGAF50000806852 fastq.gz 5.3 GB
Federated EGA
EGAF50000806861 fastq.gz 6.7 GB
Federated EGA
EGAF50000806862 fastq.gz 7.1 GB
Federated EGA
EGAF50000806885 fastq.gz 7.5 GB
Federated EGA
EGAF50000806886 fastq.gz 8.0 GB
Federated EGA
EGAF50000806893 fastq.gz 6.6 GB
Federated EGA
EGAF50000806894 fastq.gz 7.0 GB
Federated EGA
EGAF50000806949 fastq.gz 7.4 GB
Federated EGA
EGAF50000806950 fastq.gz 7.3 GB
Federated EGA
EGAF50000807907 fastq.gz 8.0 GB
Federated EGA
EGAF50000807908 fastq.gz 7.8 GB
Federated EGA
EGAF50000807980 eu_files_AD.tar.gz 243.9 MB
Federated EGA
EGAF50000808351 csv.gz 1.6 kB
Federated EGA
146 Files (936.4 GB)