About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Study cfDNA molecular profiling for finding cancer signal in high risk Breast Cancer patients

EM-seq methylation profiling MC of plasma cfDNA of high risk breast cancer patients

Request Access

Access to data generated by UHN is made available by completing the data access agreement for review by the data access committee and will be granted to qualified investigators for appropriate use.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Data Access Committee (DAC) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The Principal Investigator and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. University Health Network: The University Health Network (UHN) is the largest clinical and research hospital in Canada. UHN is affiliated with the University of Toronto and is a member of the Toronto Academic Health Science Network. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the DAC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The DAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of the province of Ontario and PHIPA. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for The Data Access Committee Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001830 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000835316 fastq.gz 5.5 GB
EGAF50000835317 fastq.gz 6.5 GB
EGAF50000835318 fastq.gz 5.6 GB
EGAF50000835319 fastq.gz 6.9 GB
EGAF50000835320 fastq.gz 6.5 GB
EGAF50000835321 fastq.gz 9.1 GB
EGAF50000835322 fastq.gz 5.2 GB
EGAF50000835323 fastq.gz 5.5 GB
EGAF50000835324 fastq.gz 5.7 GB
EGAF50000835325 fastq.gz 6.0 GB
EGAF50000835326 fastq.gz 6.4 GB
EGAF50000835327 fastq.gz 6.1 GB
EGAF50000835328 fastq.gz 5.9 GB
EGAF50000835329 fastq.gz 6.4 GB
EGAF50000835330 fastq.gz 6.9 GB
EGAF50000835331 fastq.gz 8.9 GB
EGAF50000835332 fastq.gz 5.7 GB
EGAF50000835333 fastq.gz 5.5 GB
EGAF50000835334 fastq.gz 5.4 GB
EGAF50000835335 fastq.gz 6.0 GB
EGAF50000835336 fastq.gz 6.4 GB
EGAF50000835337 fastq.gz 6.5 GB
EGAF50000835338 fastq.gz 6.8 GB
EGAF50000835339 fastq.gz 6.9 GB
EGAF50000835340 fastq.gz 5.8 GB
EGAF50000835341 fastq.gz 5.1 GB
EGAF50000835342 fastq.gz 6.0 GB
EGAF50000835343 fastq.gz 5.4 GB
EGAF50000835344 fastq.gz 5.2 GB
EGAF50000835345 fastq.gz 6.6 GB
EGAF50000835346 fastq.gz 7.0 GB
EGAF50000835347 fastq.gz 6.3 GB
EGAF50000835348 fastq.gz 9.0 GB
EGAF50000835349 fastq.gz 5.9 GB
EGAF50000835350 fastq.gz 9.6 GB
EGAF50000835351 fastq.gz 6.9 GB
EGAF50000835352 fastq.gz 5.3 GB
EGAF50000835353 fastq.gz 5.7 GB
EGAF50000835354 fastq.gz 6.1 GB
EGAF50000835355 fastq.gz 5.3 GB
EGAF50000835356 fastq.gz 5.6 GB
EGAF50000835357 fastq.gz 5.7 GB
EGAF50000835358 fastq.gz 5.9 GB
EGAF50000835359 fastq.gz 6.8 GB
EGAF50000835360 fastq.gz 6.5 GB
EGAF50000835361 fastq.gz 6.0 GB
EGAF50000835362 fastq.gz 5.8 GB
EGAF50000835363 fastq.gz 6.8 GB
EGAF50000835364 fastq.gz 6.3 GB
EGAF50000835365 fastq.gz 9.4 GB
EGAF50000835366 fastq.gz 5.3 GB
EGAF50000835367 fastq.gz 5.6 GB
EGAF50000835368 fastq.gz 5.5 GB
EGAF50000835369 fastq.gz 6.7 GB
EGAF50000835370 fastq.gz 7.2 GB
EGAF50000835371 fastq.gz 5.1 GB
EGAF50000835372 fastq.gz 5.3 GB
EGAF50000835373 fastq.gz 5.4 GB
EGAF50000835374 fastq.gz 5.6 GB
EGAF50000835375 fastq.gz 5.8 GB
EGAF50000835376 fastq.gz 6.6 GB
EGAF50000835377 fastq.gz 7.1 GB
EGAF50000835378 fastq.gz 7.1 GB
EGAF50000835379 fastq.gz 6.1 GB
EGAF50000835380 fastq.gz 9.6 GB
EGAF50000835381 fastq.gz 5.8 GB
EGAF50000835382 fastq.gz 6.4 GB
EGAF50000835383 fastq.gz 6.1 GB
EGAF50000835384 fastq.gz 6.3 GB
EGAF50000835385 fastq.gz 6.3 GB
EGAF50000835386 fastq.gz 5.7 GB
EGAF50000835387 fastq.gz 6.0 GB
EGAF50000835388 fastq.gz 6.4 GB
EGAF50000835389 fastq.gz 5.3 GB
EGAF50000835390 fastq.gz 6.6 GB
EGAF50000835391 fastq.gz 6.8 GB
EGAF50000835392 fastq.gz 7.0 GB
EGAF50000835393 fastq.gz 5.6 GB
EGAF50000835394 fastq.gz 5.7 GB
EGAF50000835395 fastq.gz 7.2 GB
EGAF50000835396 fastq.gz 6.5 GB
EGAF50000835397 fastq.gz 6.5 GB
EGAF50000835398 fastq.gz 5.3 GB
EGAF50000835399 fastq.gz 6.9 GB
EGAF50000835400 fastq.gz 6.0 GB
EGAF50000835401 fastq.gz 6.7 GB
EGAF50000835402 fastq.gz 6.8 GB
EGAF50000835403 fastq.gz 6.4 GB
EGAF50000835404 fastq.gz 5.4 GB
EGAF50000835405 fastq.gz 5.7 GB
EGAF50000835406 fastq.gz 5.6 GB
EGAF50000835407 fastq.gz 5.8 GB
EGAF50000835408 fastq.gz 6.5 GB
EGAF50000835409 fastq.gz 6.7 GB
EGAF50000835410 fastq.gz 6.6 GB
EGAF50000835411 fastq.gz 5.9 GB
EGAF50000835412 fastq.gz 6.2 GB
EGAF50000835413 fastq.gz 6.4 GB
EGAF50000835414 fastq.gz 6.7 GB
EGAF50000835415 fastq.gz 6.7 GB
EGAF50000835416 fastq.gz 7.1 GB
EGAF50000835417 fastq.gz 9.7 GB
EGAF50000835418 fastq.gz 5.3 GB
EGAF50000835419 fastq.gz 7.0 GB
EGAF50000835420 fastq.gz 5.9 GB
EGAF50000835421 fastq.gz 5.6 GB
EGAF50000835422 fastq.gz 5.6 GB
EGAF50000835423 fastq.gz 6.1 GB
EGAF50000835424 fastq.gz 5.9 GB
EGAF50000835425 fastq.gz 5.8 GB
EGAF50000835426 fastq.gz 6.3 GB
EGAF50000835427 fastq.gz 6.3 GB
EGAF50000835428 fastq.gz 5.4 GB
EGAF50000835429 fastq.gz 5.7 GB
EGAF50000835430 fastq.gz 5.4 GB
EGAF50000835431 fastq.gz 5.9 GB
EGAF50000835432 fastq.gz 6.3 GB
EGAF50000835433 fastq.gz 6.3 GB
EGAF50000835434 fastq.gz 9.1 GB
EGAF50000835435 fastq.gz 6.2 GB
EGAF50000835436 fastq.gz 6.2 GB
EGAF50000835437 fastq.gz 7.0 GB
EGAF50000835438 fastq.gz 5.9 GB
EGAF50000835439 fastq.gz 5.3 GB
EGAF50000835440 fastq.gz 6.3 GB
EGAF50000835477 fastq.gz 6.7 GB
EGAF50000835478 fastq.gz 5.7 GB
EGAF50000835479 fastq.gz 9.0 GB
EGAF50000835480 fastq.gz 5.8 GB
EGAF50000835481 fastq.gz 6.1 GB
EGAF50000835482 fastq.gz 6.2 GB
EGAF50000835483 fastq.gz 9.6 GB
EGAF50000835484 fastq.gz 6.2 GB
EGAF50000835485 fastq.gz 5.8 GB
EGAF50000835486 fastq.gz 6.1 GB
EGAF50000835517 fastq.gz 6.6 GB
EGAF50000835518 fastq.gz 5.7 GB
EGAF50000835519 fastq.gz 6.7 GB
138 Files (874.6 GB)