About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Single-cell RNA sequencing alignment files from ADHD and control cerebral organoids

This dataset contains processed single-cell RNA sequencing alignment files (BAM and BAI) generated from eight iPSC-derived cerebral organoid samples obtained from four pediatric ADHD patients and four matched healthy controls. Single-cell transcriptomic profiling was performed using the 10x Genomics Chromium Next GEM Single Cell 3' v3.1 workflow, and libraries were sequenced on an Illumina NovaSeq 6000 instrument. Read alignment, barcode processing, and gene quantification were performed using Cell Ranger with the GRCh38 human reference genome. The dataset additionally includes metadata and processed analysis objects supporting downstream transcriptomic analyses.

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Single-Cell NSC Policy – ADHD and Control iPSC Study

Data generated from this study may only be accessed by qualified researchers for use in ethically approved projects related to neurodevelopmental disorders or related biomedical research. All users must sign a Data Access Agreement (DAA) that outlines obligations including data confidentiality, secure storage, non-identifiability, and use restrictions aligned with participant consent. Data must not be used for commercial purposes or shared with unauthorized parties. Re-identification attempts are strictly prohibited. Requests will be reviewed by the Data Access Committee for compliance with ethical, legal, and institutional guidelines.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001876 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00009028046 bai 7.3 MB
EGAF00009028047 bai 6.6 MB
EGAF00009028048 bai 7.8 MB
EGAF00009028049 bai 6.8 MB
EGAF00009028051 bai 7.7 MB
EGAF00009028053 bai 6.9 MB
EGAF00009028054 bam 12.2 GB
EGAF00009028065 bam 13.5 GB
EGAF00009028066 bai 6.2 MB
EGAF00009028068 bam 13.5 GB
EGAF00009028069 bam 14.5 GB
EGAF00009028070 bai 8.3 MB
EGAF00009028071 bam 15.8 GB
EGAF00009028072 bam 12.7 GB
EGAF00009028074 bam 15.0 GB
EGAF00009028075 bam 10.8 GB
16 Files (108.1 GB)