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TNGS data for SIOPEN intermediate-risk neuroblastoma subgroup study

Targeted next-generation sequencing data for a SIOPEN intermediate-risk neuroblastoma subgroup (age >18 months, localised, unresectable, non-MYCN-amplified neuroblastoma with unfavourable histology), with a total of 31 cases analysed. All but one sample have been analysed using the same workflow, with the exception being NB32. VCF files for the analyses are included in this dataset.

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DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

VIVO Biobank Samples Data Access Policy

VIVO Biobank Samples Data Access Policy 1. Introduction This policy governs access to the genomic and phenotypic data from the VIVO Biobank Group studies deposited at the European Genome-phenome Archive (EGA). The data was collected for the purpose of genetic studies on childhood cancers. 2. Data Access Committee (DAC) Access to the data is managed by Newcastle University on behalf of the VIVO Biobank through the VIVO project specific Data Access Committee. Decisions on access are made exclusively based on scientific and ethical criteria in compliance with the original informed consent. 3. Terms of Access To request access, users must: • Be a bona fide researcher affiliated with a recognized research institution. • Provide a brief Research Project Description (max 500 words). • Submit a signed Data Access Agreement (DAA), which is a legally binding contract between the requester's institution and the DAC. 4. Permitted Use Data use is restricted based on the GA4GH Data Use Ontology (DUO) codes assigned to this dataset: • US (user-specific): This data use modifier indicates that use is limited to use by approved users. • Re-identification Prohibited: Requesters must agree not to attempt to re-identify any individual participant. • For additional clinical data, collaboration with members of the DAC is required. 5. Data Security Requirements Users must implement technical safeguards, including: • Storage on secure institutional computer systems behind a firewall. • Encryption of data if stored on portable devices (e.g., USB keys). • Access limited to authorized personnel listed in the DAA. 6. Publication & Acknowledgment Users must acknowledge the VIVO Biobank, members of the DAC, and the EGA in any resulting publications, citing the specific study accession number.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001908 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000905637 vcf 1.7 MB Report
EGAF50000905644 vcf 2.2 MB Report
EGAF50000905649 vcf 3.3 MB Report
EGAF50000905653 vcf 1.6 MB Report
EGAF50000905654 vcf 1.9 MB Report
EGAF50000905655 vcf 1.9 MB Report
EGAF50000905656 vcf 1.7 MB Report
EGAF50000905657 vcf 1.6 MB Report
EGAF50000905658 vcf 1.7 MB Report
EGAF50000905659 vcf 1.7 MB Report
EGAF50000905660 vcf 1.7 MB Report
EGAF50000905661 vcf 1.7 MB Report
EGAF50000905662 vcf 1.6 MB Report
EGAF50000905663 vcf 1.7 MB Report
EGAF50000905664 vcf 1.7 MB Report
EGAF50000905665 vcf 1.8 MB Report
EGAF50000905666 vcf 1.7 MB Report
EGAF50000905667 vcf 1.6 MB Report
EGAF50000905668 vcf 1.6 MB Report
EGAF50000905679 vcf 1.6 MB Report
EGAF50000905681 vcf 1.7 MB Report
EGAF50000905683 vcf 1.6 MB Report
EGAF50000905687 vcf 1.6 MB Report
EGAF50000905688 vcf 1.6 MB Report
EGAF50000905689 vcf 1.8 MB Report
EGAF50000905690 vcf 1.7 MB Report
EGAF50000905691 vcf 1.8 MB Report
EGAF50000905692 vcf 1.8 MB Report
EGAF50000905693 vcf 1.6 MB Report
EGAF50000905694 vcf 1.7 MB Report
EGAF50000905695 vcf 1.6 MB Report
EGAF50000905696 vcf 2.0 MB Report
EGAF50000905697 vcf 1.7 MB Report
33 Files (58.2 MB)