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WES data for SIOPEN intermediate-risk neuroblastoma subgroup study

Whole exome sequencing (WES) data analysed for the SIOPEN intermediate-risk neuroblastoma subgroup (age >18 months, localised, unresectable, non-MYCN amplified neuroblastoma with unfavourable histology), data for a total of 30 cases available. Four samples were analysed as part of another relapse neuroblastoma study (NB02 to NB05), of which two have germline comparison available. The remaining 26 cases had a different analysis workflow, with all but one having germline comparison available. VCF files from WES analyses are included in this dataset.

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DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

VIVO Biobank Samples Data Access Policy

VIVO Biobank Samples Data Access Policy 1. Introduction This policy governs access to the genomic and phenotypic data from the VIVO Biobank Group studies deposited at the European Genome-phenome Archive (EGA). The data was collected for the purpose of genetic studies on childhood cancers. 2. Data Access Committee (DAC) Access to the data is managed by Newcastle University on behalf of the VIVO Biobank through the VIVO project specific Data Access Committee. Decisions on access are made exclusively based on scientific and ethical criteria in compliance with the original informed consent. 3. Terms of Access To request access, users must: • Be a bona fide researcher affiliated with a recognized research institution. • Provide a brief Research Project Description (max 500 words). • Submit a signed Data Access Agreement (DAA), which is a legally binding contract between the requester's institution and the DAC. 4. Permitted Use Data use is restricted based on the GA4GH Data Use Ontology (DUO) codes assigned to this dataset: • US (user-specific): This data use modifier indicates that use is limited to use by approved users. • Re-identification Prohibited: Requesters must agree not to attempt to re-identify any individual participant. • For additional clinical data, collaboration with members of the DAC is required. 5. Data Security Requirements Users must implement technical safeguards, including: • Storage on secure institutional computer systems behind a firewall. • Encryption of data if stored on portable devices (e.g., USB keys). • Access limited to authorized personnel listed in the DAA. 6. Publication & Acknowledgment Users must acknowledge the VIVO Biobank, members of the DAC, and the EGA in any resulting publications, citing the specific study accession number.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001908 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000905638 vcf 543.4 kB
EGAF50000905639 vcf 516.9 kB
EGAF50000905640 vcf 3.1 MB
EGAF50000905641 vcf 32.2 MB
EGAF50000905642 vcf 706.4 kB
EGAF50000905643 vcf 1.4 MB
EGAF50000905645 vcf 882.3 kB
EGAF50000905646 vcf 4.3 MB
EGAF50000905647 vcf 1.3 MB
EGAF50000905648 vcf 1.1 MB
EGAF50000905650 vcf 21.3 MB
EGAF50000905651 vcf 18.4 MB
EGAF50000905652 vcf 1.4 MB
EGAF50000905669 vcf 18.5 MB
EGAF50000905670 vcf 17.2 MB
EGAF50000905671 vcf 563.4 kB
EGAF50000905672 vcf 559.7 kB
EGAF50000905673 vcf 571.2 kB
EGAF50000905674 vcf 1.3 MB
EGAF50000905675 vcf 3.7 MB
EGAF50000905676 vcf 1.3 MB
EGAF50000905677 vcf 731.3 kB
EGAF50000905678 vcf 1.4 MB
EGAF50000905680 vcf 730.8 kB
EGAF50000905682 vcf 657.2 kB
EGAF50000905684 vcf 935.4 kB
EGAF50000905685 vcf 1.5 MB
EGAF50000905686 vcf 2.8 MB
EGAF50000905698 vcf 1.7 MB
EGAF50000905699 vcf 553.4 kB
30 Files (141.8 MB)