About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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DKTK Organoid Platform WES

In this dataset 35 samples of the DKTK Organoid Platform where profiled via WES. Multiple samples per patient of the MetPredict cohort were sequenced to profile the inter- and intra-patient heterogeneity. This dataset contains the raw fastq files of these samples.

Request Access

Data access policy of the DKTK Organoid Platform

For access to sequencing data deposited to the European Genome-phenome Archive (EGA), application documents should be completed and returned to the Data Access Committee (DAC) of the Georg-Speyer-Haus, Institute for Tumor Biology and Experimental Therapy (email address: data-access@georg-speyer-haus.de). Applications will only be accepted electronically. Any queries regarding access procedures or completion of the forms should be sent to this address. Additional information on the data access procedure can be obtained on the EGA webpage (https://ega-archive.org/). Application requires the completion of the Data Access Agreement (including Appendix I, II and III) for each data set that must be signed by the legal entity with which you are affiliated (signed and stamped, no electronic signature). Additionally, the DAC needs a document providing proof that the applicant is working in a scientific organization (signed and stamped by a legal authority of the organization). In case of collaborative applications each institution has to submit its own application. User institutions located outside the EU/ EEA (European Economic Area) are requested to additionally enter into the Standard Contractual Clauses for the transfer of personal data to third countries. The form must be completed (including Annex A and B) and signed. Technical problems with the EGA download should be reported directly to the EGA Helpdesk. (helpdesk@ega-archive.org)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002045 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000944439 fastq.gz 7.0 GB
EGAF50000944440 fastq.gz 7.0 GB
EGAF50000944441 fastq.gz 7.2 GB
EGAF50000944442 fastq.gz 7.1 GB
EGAF50000944443 fastq.gz 8.3 GB
EGAF50000944444 fastq.gz 8.3 GB
EGAF50000944445 fastq.gz 6.8 GB
EGAF50000944446 fastq.gz 6.9 GB
EGAF50000944447 fastq.gz 10.1 GB
EGAF50000944448 fastq.gz 10.2 GB
EGAF50000944449 fastq.gz 9.1 GB
EGAF50000944450 fastq.gz 9.2 GB
EGAF50000944451 fastq.gz 10.1 GB
EGAF50000944452 fastq.gz 10.1 GB
EGAF50000944453 fastq.gz 7.2 GB
EGAF50000944454 fastq.gz 7.3 GB
EGAF50000944455 fastq.gz 7.4 GB
EGAF50000944456 fastq.gz 7.4 GB
EGAF50000944457 fastq.gz 7.7 GB
EGAF50000944458 fastq.gz 7.7 GB
EGAF50000944459 fastq.gz 7.1 GB
EGAF50000944460 fastq.gz 7.2 GB
EGAF50000944461 fastq.gz 7.3 GB
EGAF50000944462 fastq.gz 7.3 GB
EGAF50000944463 fastq.gz 8.1 GB
EGAF50000944464 fastq.gz 8.2 GB
EGAF50000944465 fastq.gz 6.4 GB
EGAF50000944466 fastq.gz 6.4 GB
EGAF50000944467 fastq.gz 6.7 GB
EGAF50000944468 fastq.gz 6.7 GB
EGAF50000944469 fastq.gz 7.0 GB
EGAF50000944470 fastq.gz 6.9 GB
EGAF50000944471 fastq.gz 7.3 GB
EGAF50000944472 fastq.gz 7.2 GB
EGAF50000944473 fastq.gz 6.8 GB
EGAF50000944474 fastq.gz 6.8 GB
EGAF50000944475 fastq.gz 7.1 GB
EGAF50000944476 fastq.gz 7.1 GB
EGAF50000944477 fastq.gz 7.0 GB
EGAF50000944478 fastq.gz 7.0 GB
EGAF50000944479 fastq.gz 7.0 GB
EGAF50000944480 fastq.gz 7.0 GB
EGAF50000944481 fastq.gz 7.7 GB
EGAF50000944482 fastq.gz 7.8 GB
EGAF50000944483 fastq.gz 7.4 GB
EGAF50000944484 fastq.gz 7.5 GB
EGAF50000944485 fastq.gz 7.5 GB
EGAF50000944486 fastq.gz 7.6 GB
EGAF50000944487 fastq.gz 7.1 GB
EGAF50000944488 fastq.gz 7.1 GB
EGAF50000944489 fastq.gz 7.3 GB
EGAF50000944490 fastq.gz 7.3 GB
EGAF50000944491 fastq.gz 7.2 GB
EGAF50000944492 fastq.gz 7.3 GB
EGAF50000944493 fastq.gz 7.7 GB
EGAF50000944494 fastq.gz 7.6 GB
EGAF50000944495 fastq.gz 7.0 GB
EGAF50000944496 fastq.gz 7.0 GB
EGAF50000944497 fastq.gz 7.4 GB
EGAF50000944498 fastq.gz 7.4 GB
EGAF50000944499 fastq.gz 7.1 GB
EGAF50000944500 fastq.gz 7.1 GB
EGAF50000944501 fastq.gz 7.1 GB
EGAF50000944502 fastq.gz 7.1 GB
EGAF50000944503 fastq.gz 7.4 GB
EGAF50000944504 fastq.gz 7.3 GB
EGAF50000944505 fastq.gz 7.9 GB
EGAF50000944506 fastq.gz 7.9 GB
EGAF50000944507 fastq.gz 7.4 GB
EGAF50000944508 fastq.gz 7.3 GB
70 Files (524.2 GB)