Whole-exome sequencing of HCC of metastatic and de novo origin
Dataset consists of tumors and matched non-tumor livers from 22 patients with multifocal hepatocellular carcinoma. Tissues were obtained from at least two distinct tumor nodules undergoing liver biopsies. Note: refer to the supplementary table of the manuscript for patient IDs and further clinical data.
- 02/09/2026
- 95 samples
- DAC: EGAC50000000917
- Technology: Illumina HiSeq 2500
- Archive: European Genome-phenome Archive (EGA)
Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel)
Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel) Access is granted only to qualified researchers affiliated with a bona fide research institution, for a clearly described research project, and subject to review and approval by the Data Access Committee "Basel Liver Biopsy Biobank". Application requirements: A completed and signed Data Access Request and Agreement, a brief project description, and the applicant’s CV (and/or relevant track record) must be provided. Permitted use: Data may be used only for the approved research project and for the approved duration. Any new purpose requires a new request and approval. Privacy and confidentiality: Data are pseudonymised. Applicants must not attempt to re-identify individuals and must protect confidentiality at all times. Data security: Data must be handled within an institutional IT environment with appropriate access controls, malware protection, and secure backup procedures. No onward transfer: Data must not be shared or transferred outside the recipient institution or to external collaborators without prior written approval; external collaborators may require a separate agreement. Publication and acknowledgement: Publications and presentations resulting from use of the data must acknowledge the data controllers as specified in the agreement. Incident reporting: Any security breach leading to disclosure must be reported without undue delay and at the latest within 72 hours. Governing law: Switzerland (Basel-City jurisdiction), as specified in the agreement.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005073 | Other | |
| EGAS00001005661 | Other | |
| EGAS50000002057 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00002048554 | bam | 8.9 GB | Report |
|
| EGAF00005493244 | bam | 6.5 GB | Report |
|
| EGAF00005493245 | bam | 19.6 GB | Report |
|
| EGAF00005493258 | bam | 8.0 GB | Report |
|
| EGAF00005493259 | bam | 14.0 GB | Report |
|
| EGAF00005493289 | bam | 43.5 GB | Report |
|
| EGAF00005493291 | bam | 7.3 GB | Report |
|
| EGAF00005493292 | bam | 18.9 GB | Report |
|
| EGAF00005493327 | bam | 20.6 GB | Report |
|
| EGAF00005493329 | bam | 13.5 GB | Report |
|
| EGAF00005493360 | bam | 20.1 GB | Report |
|
| EGAF00005493361 | bam | 8.1 GB | Report |
|
| EGAF00005493362 | bam | 22.8 GB | Report |
|
| EGAF00005493365 | bam | 28.0 GB | Report |
|
| EGAF00005493366 | bam | 8.9 GB | Report |
|
| EGAF00005493367 | bam | 21.9 GB | Report |
|
| EGAF00005493368 | bam | 9.1 GB | Report |
|
| EGAF00005493372 | bam | 20.7 GB | Report |
|
| EGAF00005493380 | bam | 12.7 GB | Report |
|
| EGAF00005493383 | bam | 15.0 GB | Report |
|
| EGAF00005493384 | bam | 8.5 GB | Report |
|
| EGAF00005493385 | bam | 9.5 GB | Report |
|
| EGAF00005493386 | bam | 15.4 GB | Report |
|
| EGAF00005493387 | bam | 15.5 GB | Report |
|
| EGAF00005493390 | bam | 8.4 GB | Report |
|
| EGAF00005493391 | bam | 21.2 GB | Report |
|
| EGAF00005493392 | bam | 24.0 GB | Report |
|
| EGAF00005493399 | bam | 9.3 GB | Report |
|
| EGAF00005493403 | bam | 14.0 GB | Report |
|
| EGAF00005493408 | bam | 7.8 GB | Report |
|
| EGAF00005493409 | bam | 14.2 GB | Report |
|
| EGAF00005493410 | bam | 12.8 GB | Report |
|
| EGAF00005493417 | bam | 20.7 GB | Report |
|
| EGAF00005493418 | bam | 8.4 GB | Report |
|
| EGAF00005493419 | bam | 18.4 GB | Report |
|
| EGAF00005493434 | bam | 7.3 GB | Report |
|
| EGAF00005493435 | bam | 17.8 GB | Report |
|
| EGAF00005493443 | bam | 13.0 GB | Report |
|
| EGAF00005493444 | bam | 25.1 GB | Report |
|
| EGAF00005493445 | bam | 10.9 GB | Report |
|
| EGAF00005493446 | bam | 26.5 GB | Report |
|
| EGAF00005493447 | bam | 27.8 GB | Report |
|
| EGAF00005493450 | bam | 28.2 GB | Report |
|
| EGAF00005493455 | bam | 11.9 GB | Report |
|
| EGAF00005493456 | bam | 31.3 GB | Report |
|
| EGAF00005493469 | bam | 12.2 GB | Report |
|
| EGAF00005493470 | bam | 30.7 GB | Report |
|
| EGAF00005557381 | bam | 19.6 GB | Report |
|
| EGAF00005557382 | bam | 19.5 GB | Report |
|
| EGAF00005557385 | bam | 13.1 GB | Report |
|
| EGAF00005557386 | bam | 24.8 GB | Report |
|
| EGAF00005557389 | bam | 36.8 GB | Report |
|
| EGAF00005557390 | bam | 19.8 GB | Report |
|
| EGAF00005557399 | bam | 23.0 GB | Report |
|
| EGAF00005557402 | bam | 22.4 GB | Report |
|
| EGAF00005557403 | bam | 19.7 GB | Report |
|
| EGAF00005557404 | bam | 22.7 GB | Report |
|
| EGAF00005557405 | bam | 26.9 GB | Report |
|
| EGAF00005557407 | bam | 27.1 GB | Report |
|
| EGAF00008898749 | bam | 20.7 GB |
|
|
| EGAF00008899209 | bam | 18.2 GB |
|
|
| EGAF00008899493 | bam | 18.2 GB |
|
|
| EGAF00008899494 | bam | 25.3 GB |
|
|
| EGAF00008899495 | bam | 13.4 GB |
|
|
| EGAF00008899496 | bam | 27.8 GB |
|
|
| EGAF00008899497 | bam | 15.4 GB |
|
|
| EGAF00008899503 | bam | 15.5 GB |
|
|
| EGAF00008937649 | bam | 17.2 GB |
|
|
| EGAF00008937650 | bam | 17.3 GB |
|
|
| EGAF00008937651 | bam | 27.5 GB |
|
|
| EGAF00008937652 | bam | 26.1 GB |
|
|
| EGAF00008937653 | bam | 23.1 GB |
|
|
| EGAF00008937654 | bam | 27.2 GB |
|
|
| EGAF00008937655 | bam | 26.5 GB |
|
|
| EGAF00008937656 | bam | 26.8 GB |
|
|
| EGAF00008937657 | bam | 28.2 GB |
|
|
| EGAF00008937658 | bam | 28.8 GB |
|
|
| EGAF00008937659 | bam | 25.8 GB |
|
|
| EGAF00008937660 | bam | 27.4 GB |
|
|
| EGAF00008937661 | bam | 28.7 GB |
|
|
| EGAF00008937662 | bam | 27.6 GB |
|
|
| EGAF00008937663 | bam | 29.4 GB |
|
|
| EGAF00008937664 | bam | 30.5 GB |
|
|
| EGAF00008937665 | bam | 34.4 GB |
|
|
| EGAF00008937666 | bam | 25.9 GB |
|
|
| EGAF00008937667 | bam | 32.3 GB |
|
|
| EGAF00008937668 | bam | 26.9 GB |
|
|
| EGAF00008937669 | bam | 25.4 GB |
|
|
| EGAF00008937670 | bam | 26.5 GB |
|
|
| EGAF00008937671 | bam | 30.0 GB |
|
|
| EGAF00008937672 | bam | 29.7 GB |
|
|
| EGAF00008937673 | bam | 28.1 GB |
|
|
| EGAF00008937674 | bam | 28.4 GB |
|
|
| EGAF00008937675 | bam | 28.2 GB |
|
|
| EGAF00008937676 | bam | 31.7 GB |
|
|
| 95 Files (2.0 TB) | ||||
