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Whole-exome sequencing of HCC of metastatic and de novo origin

Dataset consists of tumors and matched non-tumor livers from 22 patients with multifocal hepatocellular carcinoma. Tissues were obtained from at least two distinct tumor nodules undergoing liver biopsies. Note: refer to the supplementary table of the manuscript for patient IDs and further clinical data.

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Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel)

Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel) Access is granted only to qualified researchers affiliated with a bona fide research institution, for a clearly described research project, and subject to review and approval by the Data Access Committee "Basel Liver Biopsy Biobank". Application requirements: A completed and signed Data Access Request and Agreement, a brief project description, and the applicant’s CV (and/or relevant track record) must be provided. Permitted use: Data may be used only for the approved research project and for the approved duration. Any new purpose requires a new request and approval. Privacy and confidentiality: Data are pseudonymised. Applicants must not attempt to re-identify individuals and must protect confidentiality at all times. Data security: Data must be handled within an institutional IT environment with appropriate access controls, malware protection, and secure backup procedures. No onward transfer: Data must not be shared or transferred outside the recipient institution or to external collaborators without prior written approval; external collaborators may require a separate agreement. Publication and acknowledgement: Publications and presentations resulting from use of the data must acknowledge the data controllers as specified in the agreement. Incident reporting: Any security breach leading to disclosure must be reported without undue delay and at the latest within 72 hours. Governing law: Switzerland (Basel-City jurisdiction), as specified in the agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005073 Other
EGAS00001005661 Other
EGAS50000002057 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002048554 bam 8.9 GB Report
EGAF00005493244 bam 6.5 GB Report
EGAF00005493245 bam 19.6 GB Report
EGAF00005493258 bam 8.0 GB Report
EGAF00005493259 bam 14.0 GB Report
EGAF00005493289 bam 43.5 GB Report
EGAF00005493291 bam 7.3 GB Report
EGAF00005493292 bam 18.9 GB Report
EGAF00005493327 bam 20.6 GB Report
EGAF00005493329 bam 13.5 GB Report
EGAF00005493360 bam 20.1 GB Report
EGAF00005493361 bam 8.1 GB Report
EGAF00005493362 bam 22.8 GB Report
EGAF00005493365 bam 28.0 GB Report
EGAF00005493366 bam 8.9 GB Report
EGAF00005493367 bam 21.9 GB Report
EGAF00005493368 bam 9.1 GB Report
EGAF00005493372 bam 20.7 GB Report
EGAF00005493380 bam 12.7 GB Report
EGAF00005493383 bam 15.0 GB Report
EGAF00005493384 bam 8.5 GB Report
EGAF00005493385 bam 9.5 GB Report
EGAF00005493386 bam 15.4 GB Report
EGAF00005493387 bam 15.5 GB Report
EGAF00005493390 bam 8.4 GB Report
EGAF00005493391 bam 21.2 GB Report
EGAF00005493392 bam 24.0 GB Report
EGAF00005493399 bam 9.3 GB Report
EGAF00005493403 bam 14.0 GB Report
EGAF00005493408 bam 7.8 GB Report
EGAF00005493409 bam 14.2 GB Report
EGAF00005493410 bam 12.8 GB Report
EGAF00005493417 bam 20.7 GB Report
EGAF00005493418 bam 8.4 GB Report
EGAF00005493419 bam 18.4 GB Report
EGAF00005493434 bam 7.3 GB Report
EGAF00005493435 bam 17.8 GB Report
EGAF00005493443 bam 13.0 GB Report
EGAF00005493444 bam 25.1 GB Report
EGAF00005493445 bam 10.9 GB Report
EGAF00005493446 bam 26.5 GB Report
EGAF00005493447 bam 27.8 GB Report
EGAF00005493450 bam 28.2 GB Report
EGAF00005493455 bam 11.9 GB Report
EGAF00005493456 bam 31.3 GB Report
EGAF00005493469 bam 12.2 GB Report
EGAF00005493470 bam 30.7 GB Report
EGAF00005557381 bam 19.6 GB Report
EGAF00005557382 bam 19.5 GB Report
EGAF00005557385 bam 13.1 GB Report
EGAF00005557386 bam 24.8 GB Report
EGAF00005557389 bam 36.8 GB Report
EGAF00005557390 bam 19.8 GB Report
EGAF00005557399 bam 23.0 GB Report
EGAF00005557402 bam 22.4 GB Report
EGAF00005557403 bam 19.7 GB Report
EGAF00005557404 bam 22.7 GB Report
EGAF00005557405 bam 26.9 GB Report
EGAF00005557407 bam 27.1 GB Report
EGAF00008898749 bam 20.7 GB
EGAF00008899209 bam 18.2 GB
EGAF00008899493 bam 18.2 GB
EGAF00008899494 bam 25.3 GB
EGAF00008899495 bam 13.4 GB
EGAF00008899496 bam 27.8 GB
EGAF00008899497 bam 15.4 GB
EGAF00008899503 bam 15.5 GB
EGAF00008937649 bam 17.2 GB
EGAF00008937650 bam 17.3 GB
EGAF00008937651 bam 27.5 GB
EGAF00008937652 bam 26.1 GB
EGAF00008937653 bam 23.1 GB
EGAF00008937654 bam 27.2 GB
EGAF00008937655 bam 26.5 GB
EGAF00008937656 bam 26.8 GB
EGAF00008937657 bam 28.2 GB
EGAF00008937658 bam 28.8 GB
EGAF00008937659 bam 25.8 GB
EGAF00008937660 bam 27.4 GB
EGAF00008937661 bam 28.7 GB
EGAF00008937662 bam 27.6 GB
EGAF00008937663 bam 29.4 GB
EGAF00008937664 bam 30.5 GB
EGAF00008937665 bam 34.4 GB
EGAF00008937666 bam 25.9 GB
EGAF00008937667 bam 32.3 GB
EGAF00008937668 bam 26.9 GB
EGAF00008937669 bam 25.4 GB
EGAF00008937670 bam 26.5 GB
EGAF00008937671 bam 30.0 GB
EGAF00008937672 bam 29.7 GB
EGAF00008937673 bam 28.1 GB
EGAF00008937674 bam 28.4 GB
EGAF00008937675 bam 28.2 GB
EGAF00008937676 bam 31.7 GB
95 Files (2.0 TB)