About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNAseq of AML immune cells

This dataset contains demultiplexed paired-end FASTQ files generated from longitudinal bone marrow aspirates. A total of 20 samples were collected from 7 patients (6 with AML and 1 with MDS) enrolled in a phase Ib clinical trial (NCT03066648) evaluating anti-TIM3 in combination with decitabine. Libraries were constructed using the 10x Genomics Chromium Single Cell 5' platform. The data consists of raw single-cell RNA sequencing outputs.

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Access application page in SD Apply for dataset EGAD50000002961

To obtain access to data stored in FEGA Finland, we would like to inform you that access will be granted through the local access management system SD Apply. It is important to note that applications submitted via the EGA DAC portal will not be processed. For comprehensive details regarding reuse policies and other essential documentation, please visit the access application page in SD Apply. We kindly invite you to follow the provided link (next to the policy title) and submit your access application through SD Apply. Your cooperation in this matter is greatly appreciated.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002060 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
EGAF50000853309 fastq.gz 18.6 GB
EGAF50000853311 fastq.gz 8.1 GB
EGAF50000853671 fastq.gz 9.4 GB
EGAF50000856871 fastq.gz 25.2 GB
EGAF50000856958 fastq.gz 12.2 GB
EGAF50000857263 fastq.gz 7.6 GB
EGAF50000860881 fastq.gz 22.8 GB
EGAF50000860939 fastq.gz 28.5 GB
EGAF50000860943 fastq.gz 10.9 GB
EGAF50000861427 fastq.gz 28.6 GB
EGAF50000861431 fastq.gz 11.5 GB
EGAF50000861432 fastq.gz 3.3 GB
EGAF50000861434 fastq.gz 32.1 GB
EGAF50000861499 fastq.gz 27.8 GB
EGAF50000861500 fastq.gz 11.4 GB
EGAF50000861501 fastq.gz 9.7 GB
EGAF50000861502 fastq.gz 10.3 GB
EGAF50000861504 fastq.gz 23.6 GB
EGAF50000899799 fastq.gz 6.9 GB
EGAF50000899800 fastq.gz 16.8 GB
EGAF50000899801 fastq.gz 19.3 GB
EGAF50000899802 fastq.gz 7.9 GB
EGAF50000899803 fastq.gz 16.7 GB
EGAF50000899804 fastq.gz 6.8 GB
EGAF50000899805 fastq.gz 11.4 GB
EGAF50000899806 fastq.gz 28.2 GB
EGAF50000901994 fastq.gz 41.9 GB
EGAF50000901995 fastq.gz 17.0 GB
EGAF50000901996 fastq.gz 21.0 GB
EGAF50000901997 fastq.gz 8.6 GB
EGAF50000901998 fastq.gz 12.5 GB
EGAF50000901999 fastq.gz 31.1 GB
EGAF50000902000 fastq.gz 39.5 GB
EGAF50000902001 fastq.gz 16.0 GB
EGAF50000902002 fastq.gz 9.3 GB
EGAF50000902003 fastq.gz 22.9 GB
EGAF50000902004 fastq.gz 7.8 GB
EGAF50000902005 fastq.gz 18.9 GB
EGAF50000948334 fastq.gz 12.4 GB
EGAF50000948335 fastq.gz 30.7 GB
40 Files (705.2 GB)