About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Human breast cancer epigenetic sequencing data

Controlled-access sequencing data generated from human breast tumor samples in the study "Epigenetic Heterogeneity in Breast Tumors with Implications for Disease Diagnosis and Monitoring". The dataset includes whole-genome DNA methylation sequencing, enzyme-mediated methylation sequencing of sorted tumor-cell populations, single-nucleus CUT&Tag, and single-cell RNA and chromatin-accessibility multiome sequencing. Raw sequencing data are provided as FASTQ files.

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Breast Cancer Epigenetic Sequencing Data Access Policy

Access to these controlled human sequencing data is managed by the Weizmann Breast Cancer Epigenetics Data Access Committee. Access may be granted to bona fide researchers for scientific research consistent with the original study purpose and applicable informed consent and ethical approvals. Approved users must maintain data confidentiality and security, must not attempt to identify research participants, and must not redistribute the data to unauthorized third parties.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002070 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000954805 fastq.gz 19.7 GB
EGAF50000954806 fastq.gz 20.9 GB
EGAF50000954807 fastq.gz 26.3 GB
EGAF50000954808 fastq.gz 24.9 GB
EGAF50000954809 fastq.gz 12.9 GB
EGAF50000954810 fastq.gz 12.9 GB
EGAF50000954811 fastq.gz 22.0 GB
EGAF50000954812 fastq.gz 20.7 GB
EGAF50000954813 fastq.gz 15.9 GB
EGAF50000954814 fastq.gz 16.8 GB
EGAF50000954815 fastq.gz 17.8 GB
EGAF50000954816 fastq.gz 16.8 GB
EGAF50000954817 fastq.gz 15.6 GB
EGAF50000954818 fastq.gz 15.4 GB
EGAF50000954819 fastq.gz 17.4 GB
EGAF50000954820 fastq.gz 18.0 GB
EGAF50000954821 fastq.gz 17.5 GB
EGAF50000954822 fastq.gz 18.9 GB
EGAF50000954823 fastq.gz 15.4 GB
EGAF50000954824 fastq.gz 16.0 GB
EGAF50000954825 fastq.gz 17.8 GB
EGAF50000954826 fastq.gz 19.0 GB
EGAF50000954827 fastq.gz 17.9 GB
EGAF50000954828 fastq.gz 16.3 GB
EGAF50000954829 fastq.gz 17.9 GB
EGAF50000954830 fastq.gz 19.5 GB
EGAF50000954831 fastq.gz 20.1 GB
EGAF50000954832 fastq.gz 20.7 GB
EGAF50000954833 fastq.gz 21.8 GB
EGAF50000954834 fastq.gz 23.5 GB
EGAF50000954835 fastq.gz 19.6 GB
EGAF50000954836 fastq.gz 20.5 GB
EGAF50000954837 fastq.gz 9.6 GB
EGAF50000954838 fastq.gz 10.4 GB
EGAF50000954839 fastq.gz 7.2 GB
EGAF50000954840 fastq.gz 7.9 GB
EGAF50000954841 fastq.gz 8.1 GB
EGAF50000954842 fastq.gz 8.7 GB
EGAF50000954843 fastq.gz 10.3 GB
EGAF50000954844 fastq.gz 9.5 GB
EGAF50000954845 fastq.gz 10.0 GB
EGAF50000954846 fastq.gz 9.3 GB
EGAF50000954847 fastq.gz 7.2 GB
EGAF50000954848 fastq.gz 7.9 GB
EGAF50000954849 fastq.gz 7.8 GB
EGAF50000954850 fastq.gz 8.4 GB
EGAF50000954851 fastq.gz 8.0 GB
EGAF50000954852 fastq.gz 8.6 GB
EGAF50000954853 fastq.gz 9.7 GB
EGAF50000954854 fastq.gz 10.5 GB
EGAF50000954855 fastq.gz 7.6 GB
EGAF50000954856 fastq.gz 7.0 GB
EGAF50000954857 fastq.gz 7.3 GB
EGAF50000954858 fastq.gz 7.9 GB
EGAF50000954859 fastq.gz 2.5 GB
EGAF50000954860 fastq.gz 2.5 GB
EGAF50000954861 fastq.gz 7.3 GB
EGAF50000954862 fastq.gz 20.4 GB
EGAF50000954863 fastq.gz 20.9 GB
EGAF50000954864 fastq.gz 4.4 GB
EGAF50000954865 fastq.gz 6.7 GB
EGAF50000954866 fastq.gz 21.5 GB
EGAF50000954867 fastq.gz 823.9 MB
EGAF50000954868 fastq.gz 2.0 GB
EGAF50000954869 fastq.gz 1.8 GB
EGAF50000954870 fastq.gz 597.8 MB
EGAF50000954871 fastq.gz 843.4 MB
EGAF50000954872 fastq.gz 1.2 GB
EGAF50000954873 fastq.gz 2.6 GB
EGAF50000954874 fastq.gz 2.3 GB
EGAF50000954875 fastq.gz 2.2 GB
EGAF50000954876 fastq.gz 838.0 MB
EGAF50000954877 fastq.gz 1.1 GB
EGAF50000954878 fastq.gz 2.5 GB
EGAF50000954879 fastq.gz 799.2 MB
EGAF50000954880 fastq.gz 1.0 GB
EGAF50000954881 fastq.gz 2.3 GB
EGAF50000954882 fastq.gz 2.0 GB
EGAF50000954883 fastq.gz 886.3 MB
EGAF50000954884 fastq.gz 1.2 GB
EGAF50000954885 fastq.gz 2.8 GB
EGAF50000954886 fastq.gz 2.5 GB
EGAF50000954887 fastq.gz 2.4 GB
EGAF50000954888 fastq.gz 733.8 MB
EGAF50000954889 fastq.gz 1.0 GB
EGAF50000954890 fastq.gz 2.1 GB
EGAF50000954891 fastq.gz 2.2 GB
EGAF50000954892 fastq.gz 1.9 GB
EGAF50000954893 fastq.gz 950.0 MB
EGAF50000954894 fastq.gz 686.9 MB
EGAF50000954895 fastq.gz 997.4 MB
EGAF50000954896 fastq.gz 2.3 GB
EGAF50000954897 fastq.gz 2.0 GB
EGAF50000954898 fastq.gz 702.9 MB
EGAF50000954899 fastq.gz 2.6 GB
EGAF50000954900 fastq.gz 791.8 MB
EGAF50000954901 fastq.gz 1.1 GB
EGAF50000954902 fastq.gz 2.3 GB
EGAF50000954903 fastq.gz 1.6 GB
EGAF50000954904 fastq.gz 527.5 MB
EGAF50000954905 fastq.gz 724.1 MB
EGAF50000954906 fastq.gz 1.4 GB
EGAF50000954907 fastq.gz 196.9 MB
EGAF50000954908 fastq.gz 282.8 MB
EGAF50000954909 fastq.gz 643.0 MB
EGAF50000954910 fastq.gz 571.0 MB
EGAF50000954911 fastq.gz 234.5 MB
EGAF50000954912 fastq.gz 330.4 MB
EGAF50000954913 fastq.gz 757.4 MB
EGAF50000954914 fastq.gz 667.4 MB
EGAF50000954915 fastq.gz 192.6 MB
EGAF50000954916 fastq.gz 271.6 MB
EGAF50000954917 fastq.gz 619.9 MB
EGAF50000954918 fastq.gz 548.6 MB
EGAF50000954919 fastq.gz 245.1 MB
EGAF50000954920 fastq.gz 345.5 MB
EGAF50000954921 fastq.gz 688.7 MB
EGAF50000954922 fastq.gz 781.8 MB
EGAF50000954923 fastq.gz 8.3 GB
EGAF50000954924 fastq.gz 8.8 GB
EGAF50000954925 fastq.gz 908.0 MB
EGAF50000954926 fastq.gz 1.2 GB
EGAF50000954927 fastq.gz 2.8 GB
EGAF50000954928 fastq.gz 2.5 GB
EGAF50000954929 fastq.gz 2.1 GB
EGAF50000954930 fastq.gz 1.9 GB
EGAF50000954931 fastq.gz 636.4 MB
EGAF50000954932 fastq.gz 873.8 MB
EGAF50000954933 fastq.gz 823.7 MB
EGAF50000954934 fastq.gz 2.0 GB
EGAF50000954935 fastq.gz 1.8 GB
EGAF50000954936 fastq.gz 600.2 MB
EGAF50000954937 fastq.gz 806.8 MB
EGAF50000954938 fastq.gz 1.1 GB
EGAF50000954939 fastq.gz 2.5 GB
EGAF50000954940 fastq.gz 2.2 GB
EGAF50000954941 fastq.gz 1.5 GB
EGAF50000954942 fastq.gz 3.3 GB
EGAF50000954943 fastq.gz 2.9 GB
EGAF50000954944 fastq.gz 1.1 GB
EGAF50000954945 fastq.gz 18.3 MB
EGAF50000954946 fastq.gz 24.7 MB
EGAF50000954947 fastq.gz 52.6 MB
EGAF50000954948 fastq.gz 46.7 MB
EGAF50000954949 fastq.gz 941.9 MB
EGAF50000954950 fastq.gz 1.3 GB
EGAF50000954951 fastq.gz 2.8 GB
EGAF50000954952 fastq.gz 2.5 GB
EGAF50000954953 fastq.gz 2.7 GB
EGAF50000954954 fastq.gz 904.2 MB
EGAF50000954955 fastq.gz 1.2 GB
EGAF50000954956 fastq.gz 2.4 GB
EGAF50000954957 fastq.gz 1.9 GB
EGAF50000954958 fastq.gz 690.7 MB
EGAF50000954959 fastq.gz 2.1 GB
EGAF50000954960 fastq.gz 944.9 MB
EGAF50000954961 fastq.gz 1.6 GB
EGAF50000954962 fastq.gz 1.4 GB
EGAF50000954963 fastq.gz 508.2 MB
EGAF50000954964 fastq.gz 705.0 MB
EGAF50000954965 fastq.gz 3.1 GB
EGAF50000954966 fastq.gz 1.0 GB
EGAF50000954967 fastq.gz 1.4 GB
EGAF50000954968 fastq.gz 2.7 GB
EGAF50000954969 fastq.gz 1.0 GB
EGAF50000954970 fastq.gz 1.4 GB
EGAF50000954971 fastq.gz 3.2 GB
EGAF50000954972 fastq.gz 2.8 GB
EGAF50000954973 fastq.gz 918.1 MB
EGAF50000954974 fastq.gz 2.8 GB
EGAF50000954975 fastq.gz 1.2 GB
EGAF50000954976 fastq.gz 2.5 GB
EGAF50000954977 fastq.gz 2.4 GB
EGAF50000954978 fastq.gz 841.8 MB
EGAF50000954979 fastq.gz 1.2 GB
EGAF50000954980 fastq.gz 2.7 GB
176 Files (1.0 TB)