About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Biokey PBMC: 10x Chromium single-cell TCR sequencing

Single-cell TCR sequencing of serial peripheral blood mononuclear cell (PBMC) samples (n=76), collected at baseline (Pre) and after 9 days of anti-PD1 treatment (On). Of these, 68 PBMC samples were pooled in 34 pools of two, loaded per lane on the 10x Genomics chip in equal proportions according to a pre-designed pooling matrix. Pooled samples were depooled by matching cell barcodes to the patient assignments established from the corresponding scRNA-seq data (see accompanying scRNA-seq metadata file).

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VIB Policy for Data Access and Data Transfer

Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted within the EGA portal, which will then generate a notification to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - VIB will send a request form to the applicant to complete. - The completed form should amongst other request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the completed request form. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002113 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000975588 fastq.gz 1.7 GB
EGAF50000975589 fastq.gz 2.2 GB
EGAF50000975590 fastq.gz 1.6 GB
EGAF50000975591 fastq.gz 2.0 GB
EGAF50000975592 fastq.gz 388.6 MB
EGAF50000975593 fastq.gz 887.0 MB
EGAF50000975594 fastq.gz 625.1 MB
EGAF50000975595 fastq.gz 1.4 GB
EGAF50000975596 fastq.gz 550.1 MB
EGAF50000975597 fastq.gz 1.2 GB
EGAF50000975598 fastq.gz 271.7 MB
EGAF50000975599 fastq.gz 603.2 MB
EGAF50000975600 fastq.gz 2.2 GB
EGAF50000975601 fastq.gz 2.9 GB
EGAF50000975602 fastq.gz 1.7 GB
EGAF50000975603 fastq.gz 2.2 GB
EGAF50000975604 fastq.gz 3.1 GB
EGAF50000975605 fastq.gz 4.0 GB
EGAF50000975606 fastq.gz 3.3 GB
EGAF50000975607 fastq.gz 4.2 GB
EGAF50000975608 fastq.gz 3.7 GB
EGAF50000975609 fastq.gz 4.8 GB
EGAF50000975610 fastq.gz 2.5 GB
EGAF50000975611 fastq.gz 3.2 GB
EGAF50000975612 fastq.gz 2.4 GB
EGAF50000975613 fastq.gz 3.0 GB
EGAF50000975614 fastq.gz 1.5 GB
EGAF50000975615 fastq.gz 1.9 GB
EGAF50000975616 fastq.gz 2.4 GB
EGAF50000975617 fastq.gz 3.1 GB
EGAF50000975618 fastq.gz 309.9 MB
EGAF50000975619 fastq.gz 719.5 MB
EGAF50000975620 fastq.gz 1.8 GB
EGAF50000975621 fastq.gz 2.2 GB
EGAF50000975622 fastq.gz 2.4 GB
EGAF50000975623 fastq.gz 3.1 GB
EGAF50000975624 fastq.gz 1.1 GB
EGAF50000975625 fastq.gz 2.5 GB
EGAF50000975626 fastq.gz 2.7 GB
EGAF50000975627 fastq.gz 3.4 GB
EGAF50000975628 fastq.gz 1.5 GB
EGAF50000975629 fastq.gz 2.0 GB
EGAF50000975630 fastq.gz 1.6 GB
EGAF50000975631 fastq.gz 2.0 GB
EGAF50000975632 fastq.gz 640.4 MB
EGAF50000975633 fastq.gz 1.5 GB
EGAF50000975634 fastq.gz 1.6 GB
EGAF50000975635 fastq.gz 2.0 GB
EGAF50000975636 fastq.gz 1.5 GB
EGAF50000975637 fastq.gz 1.9 GB
EGAF50000975638 fastq.gz 2.4 GB
EGAF50000975639 fastq.gz 3.7 GB
EGAF50000975640 fastq.gz 1.5 GB
EGAF50000975641 fastq.gz 1.9 GB
EGAF50000975642 fastq.gz 2.3 GB
EGAF50000975643 fastq.gz 2.9 GB
EGAF50000975644 fastq.gz 1.4 GB
EGAF50000975645 fastq.gz 1.8 GB
EGAF50000975646 fastq.gz 1.8 GB
EGAF50000975647 fastq.gz 2.3 GB
EGAF50000975648 fastq.gz 1.7 GB
EGAF50000975649 fastq.gz 2.1 GB
EGAF50000975650 fastq.gz 1.6 GB
EGAF50000975651 fastq.gz 2.0 GB
EGAF50000975652 fastq.gz 870.9 MB
EGAF50000975653 fastq.gz 2.0 GB
EGAF50000975654 fastq.gz 937.1 MB
EGAF50000975655 fastq.gz 2.2 GB
EGAF50000975656 fastq.gz 1.0 GB
EGAF50000975657 fastq.gz 2.4 GB
EGAF50000975658 fastq.gz 2.1 GB
EGAF50000975659 fastq.gz 3.0 GB
EGAF50000975660 fastq.gz 917.7 MB
EGAF50000975661 fastq.gz 2.2 GB
EGAF50000975662 fastq.gz 2.1 GB
EGAF50000975663 fastq.gz 3.0 GB
EGAF50000975664 fastq.gz 2.1 GB
EGAF50000975665 fastq.gz 3.1 GB
EGAF50000975666 fastq.gz 2.0 GB
EGAF50000975667 fastq.gz 3.0 GB
EGAF50000975668 fastq.gz 321.3 MB
EGAF50000975669 fastq.gz 731.2 MB
EGAF50000975670 fastq.gz 423.2 MB
EGAF50000975671 fastq.gz 994.1 MB
EGAF50000975672 csv 32.5 MB
85 Files (167.1 GB)