About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Biokey PBMC: 10x Chromium single-cell BCR sequencing

Single-cell BCR sequencing of serial peripheral blood mononuclear cell (PBMC) samples (n=76), collected at baseline (Pre) and after 9 days of anti-PD1 treatment (On). Of these, 68 PBMC samples were pooled in 34 pools of two, loaded per lane on the 10x Genomics chip in equal proportions according to a pre-designed pooling matrix. Pooled samples were depooled by matching cell barcodes to the patient assignments established from the corresponding scRNA-seq data (see accompanying scRNA-seq metadata file).

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VIB Policy for Data Access and Data Transfer

Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted within the EGA portal, which will then generate a notification to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - VIB will send a request form to the applicant to complete. - The completed form should amongst other request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the completed request form. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002113 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000975420 fastq.gz 885.8 MB
EGAF50000975421 fastq.gz 1.4 GB
EGAF50000975422 fastq.gz 862.7 MB
EGAF50000975423 fastq.gz 1.4 GB
EGAF50000975424 fastq.gz 158.4 MB
EGAF50000975425 fastq.gz 365.1 MB
EGAF50000975426 fastq.gz 259.1 MB
EGAF50000975427 fastq.gz 602.9 MB
EGAF50000975428 fastq.gz 238.3 MB
EGAF50000975429 fastq.gz 546.1 MB
EGAF50000975430 fastq.gz 278.3 MB
EGAF50000975431 fastq.gz 646.9 MB
EGAF50000975432 fastq.gz 839.8 MB
EGAF50000975433 fastq.gz 1.3 GB
EGAF50000975434 fastq.gz 813.8 MB
EGAF50000975435 fastq.gz 1.2 GB
EGAF50000975436 fastq.gz 907.2 MB
EGAF50000975437 fastq.gz 1.3 GB
EGAF50000975438 fastq.gz 724.6 MB
EGAF50000975439 fastq.gz 1.0 GB
EGAF50000975440 fastq.gz 742.8 MB
EGAF50000975441 fastq.gz 1.0 GB
EGAF50000975442 fastq.gz 709.8 MB
EGAF50000975443 fastq.gz 1.0 GB
EGAF50000975444 fastq.gz 843.2 MB
EGAF50000975445 fastq.gz 1.1 GB
EGAF50000975446 fastq.gz 597.6 MB
EGAF50000975447 fastq.gz 926.5 MB
EGAF50000975448 fastq.gz 720.5 MB
EGAF50000975449 fastq.gz 1.0 GB
EGAF50000975450 fastq.gz 367.9 MB
EGAF50000975451 fastq.gz 881.4 MB
EGAF50000975452 fastq.gz 976.0 MB
EGAF50000975453 fastq.gz 1.5 GB
EGAF50000975454 fastq.gz 808.9 MB
EGAF50000975455 fastq.gz 1.1 GB
EGAF50000975456 fastq.gz 486.2 MB
EGAF50000975457 fastq.gz 1.1 GB
EGAF50000975458 fastq.gz 744.5 MB
EGAF50000975459 fastq.gz 1.0 GB
EGAF50000975460 fastq.gz 803.3 MB
EGAF50000975461 fastq.gz 1.2 GB
EGAF50000975462 fastq.gz 972.9 MB
EGAF50000975463 fastq.gz 1.6 GB
EGAF50000975464 fastq.gz 112.4 MB
EGAF50000975465 fastq.gz 256.0 MB
EGAF50000975466 fastq.gz 1.1 GB
EGAF50000975467 fastq.gz 1.7 GB
EGAF50000975468 fastq.gz 789.8 MB
EGAF50000975469 fastq.gz 1.2 GB
EGAF50000975470 fastq.gz 418.2 MB
EGAF50000975471 fastq.gz 962.3 MB
EGAF50000975472 fastq.gz 929.0 MB
EGAF50000975473 fastq.gz 1.4 GB
EGAF50000975474 fastq.gz 816.3 MB
EGAF50000975475 fastq.gz 1.3 GB
EGAF50000975476 fastq.gz 696.8 MB
EGAF50000975477 fastq.gz 1.0 GB
EGAF50000975478 fastq.gz 840.4 MB
EGAF50000975479 fastq.gz 1.2 GB
EGAF50000975480 fastq.gz 799.5 MB
EGAF50000975481 fastq.gz 1.1 GB
EGAF50000975482 fastq.gz 759.8 MB
EGAF50000975483 fastq.gz 1.1 GB
EGAF50000975484 fastq.gz 307.1 MB
EGAF50000975485 fastq.gz 679.2 MB
EGAF50000975486 fastq.gz 310.2 MB
EGAF50000975487 fastq.gz 724.7 MB
EGAF50000975488 fastq.gz 429.3 MB
EGAF50000975489 fastq.gz 1.0 GB
EGAF50000975490 fastq.gz 354.9 MB
EGAF50000975491 fastq.gz 807.7 MB
EGAF50000975492 fastq.gz 381.9 MB
EGAF50000975493 fastq.gz 877.9 MB
EGAF50000975494 fastq.gz 302.0 MB
EGAF50000975495 fastq.gz 686.7 MB
EGAF50000975496 fastq.gz 359.4 MB
EGAF50000975497 fastq.gz 849.8 MB
EGAF50000975498 fastq.gz 427.3 MB
EGAF50000975499 fastq.gz 1.0 GB
EGAF50000975500 fastq.gz 411.3 MB
EGAF50000975501 fastq.gz 970.9 MB
EGAF50000975502 fastq.gz 351.2 MB
EGAF50000975503 fastq.gz 825.0 MB
EGAF50000975672 csv 32.5 MB
85 Files (68.8 GB)