About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNA-seq data from HNSCC samples before and after BA treatment

Tumor biopsies from 6 head and neck small cell carcinoma (HNSCC) berfore and 3-weeks after bintrafusp-alfa treatment were analyzed using single-cell RNA sequencing (droplet-based 3' 10x genomics). Library were sequenced using the Chromium plateform. Generated fastq files were processed using cellranger to generat the count matrices.

Request Access

Process to obtain access to the ICING dataset available through the European Genome-phenome Archive (EGA):

Data sharing is governed by a Data Access Agreement administered by UNICANCER, the data owner. Researchers seeking access should submit a request including their name, institution, principal investigator or supervisor (if applicable) contact details, and a description of the proposed research project. Requests should be sent to mta-dta@unicancer.fr and helene.salmon@curie.fr and will be reviewed by representatives from UNICANCER and Institut Curie. Following approval, applicants will be required to complete and sign the Data Access Agreement through their institution before data access is granted.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002114 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000975673 tsv.gz 64.3 kB
EGAF50000975674 tsv.gz 333.7 kB
EGAF50000975675 mtx.gz 72.1 MB
EGAF50000975676 tsv.gz 71.0 kB
EGAF50000975677 tsv.gz 333.7 kB
EGAF50000975678 mtx.gz 78.0 MB
EGAF50000975679 tsv.gz 50.9 kB
EGAF50000975680 tsv.gz 333.7 kB
EGAF50000975681 mtx.gz 53.4 MB
EGAF50000975682 tsv.gz 89.4 kB
EGAF50000975683 tsv.gz 333.7 kB
EGAF50000975684 tsv.gz 92.6 kB
EGAF50000975685 tsv.gz 333.7 kB
EGAF50000975686 mtx.gz 90.7 MB
EGAF50000975687 tsv.gz 78.4 kB
EGAF50000975688 tsv.gz 333.7 kB
EGAF50000975689 mtx.gz 96.9 MB
EGAF50000975690 tsv.gz 18.2 kB
EGAF50000975691 tsv.gz 333.7 kB
EGAF50000975692 mtx.gz 8.3 MB
EGAF50000975693 tsv.gz 94.7 kB
EGAF50000975694 tsv.gz 333.7 kB
EGAF50000975695 mtx.gz 92.3 MB
EGAF50000975696 tsv.gz 76.6 kB
EGAF50000975697 tsv.gz 333.7 kB
EGAF50000975698 mtx.gz 83.9 MB
EGAF50000975699 tsv.gz 80.4 kB
EGAF50000975700 tsv.gz 333.7 kB
EGAF50000975701 mtx.gz 87.6 MB
EGAF50000975702 tsv.gz 59.0 kB
EGAF50000975703 tsv.gz 333.7 kB
EGAF50000975704 mtx.gz 76.9 MB
EGAF50000975705 tsv.gz 85.9 kB
EGAF50000975706 tsv.gz 333.7 kB
EGAF50000975707 mtx.gz 89.2 MB
EGAF50000975708 fastq.gz 13.3 GB
EGAF50000975709 fastq.gz 27.9 GB
EGAF50000975710 fastq.gz 9.9 GB
EGAF50000975711 fastq.gz 21.5 GB
EGAF50000975712 fastq.gz 13.7 GB
EGAF50000975713 fastq.gz 30.0 GB
EGAF50000975714 fastq.gz 13.2 GB
EGAF50000975715 fastq.gz 28.9 GB
EGAF50000975716 fastq.gz 13.0 GB
EGAF50000975717 fastq.gz 28.2 GB
EGAF50000975718 fastq.gz 14.1 GB
EGAF50000975719 fastq.gz 31.7 GB
EGAF50000975720 fastq.gz 17.6 GB
EGAF50000975721 fastq.gz 34.9 GB
EGAF50000975722 fastq.gz 13.4 GB
EGAF50000975723 fastq.gz 30.5 GB
EGAF50000975724 fastq.gz 12.8 GB
EGAF50000975725 fastq.gz 27.4 GB
EGAF50000975726 fastq.gz 13.7 GB
EGAF50000975727 fastq.gz 30.0 GB
EGAF50000975728 fastq.gz 12.6 GB
EGAF50000975729 fastq.gz 26.8 GB
EGAF50000975730 fastq.gz 12.5 GB
EGAF50000975731 fastq.gz 27.0 GB
EGAF50000975732 mtx.gz 113.1 MB
60 Files (505.6 GB)