About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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transcriptomics for NIRV-NSCLC4 cohort

The goal of IMMUcan is to understand how the immune system interacts with tumors and how therapeutic interventions influence this interaction. This cohort includes patients from the Nirvana (NCT03774732) trial treated with PD-1 Inhibitor and Chemotherapy with Concurrent Irradiation at Varied Tumour Sites in Advanced Non-small Cell Lung Cancer. This dataset contains transcriptomics data processed with the STAR pipeline. Two sequencing kits were employed: Roche KAPA for high-quality RNA samples and Takara SMART-Seq Stranded for samples with limited RNA quantities. It contains gene-level counts.

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DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0045054

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Terms of use to access IMMUcan data v2.0

The applicant needs to agree with the Terms of use to access IMMUcan data through EGA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002115 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000975735 txt 1.2 MB
EGAF50000975738 txt 1.2 MB
EGAF50000975741 txt 1.2 MB
EGAF50000975744 txt 1.2 MB
EGAF50000975747 txt 1.2 MB
EGAF50000975750 txt 1.2 MB
EGAF50000975753 txt 1.2 MB
EGAF50000975756 txt 1.2 MB
EGAF50000975759 txt 1.2 MB
EGAF50000975762 txt 1.2 MB
EGAF50000975765 txt 1.2 MB
EGAF50000975768 txt 1.2 MB
EGAF50000975771 txt 1.2 MB
EGAF50000975774 txt 1.2 MB
EGAF50000975777 txt 1.2 MB
EGAF50000975780 txt 1.2 MB
EGAF50000975783 txt 1.2 MB
EGAF50000975786 txt 1.3 MB
EGAF50000975789 txt 1.2 MB
EGAF50000975792 txt 1.2 MB
EGAF50000975795 txt 1.2 MB
EGAF50000975798 txt 1.2 MB
EGAF50000975801 txt 1.2 MB
EGAF50000975804 txt 1.2 MB
EGAF50000975807 txt 1.2 MB
EGAF50000975810 txt 1.2 MB
EGAF50000975811 txt 1.2 MB
EGAF50000975814 txt 1.2 MB
EGAF50000975817 txt 1.2 MB
EGAF50000975820 txt 1.2 MB
EGAF50000975823 txt 1.2 MB
EGAF50000975826 txt 1.2 MB
EGAF50000975829 txt 1.2 MB
EGAF50000975832 txt 1.2 MB
EGAF50000975835 txt 1.2 MB
EGAF50000975838 txt 1.2 MB
EGAF50000975839 txt 1.2 MB
EGAF50000975842 txt 1.2 MB
EGAF50000975845 txt 1.2 MB
EGAF50000975848 txt 1.2 MB
EGAF50000975851 txt 1.2 MB
EGAF50000975854 txt 1.2 MB
EGAF50000975857 txt 1.2 MB
EGAF50000975860 txt 1.2 MB
EGAF50000975861 txt 1.2 MB
EGAF50000975864 txt 1.2 MB
EGAF50000975867 txt 1.2 MB
EGAF50000975870 txt 1.2 MB
EGAF50000975873 txt 1.2 MB
EGAF50000975876 txt 1.2 MB
EGAF50000975879 txt 1.2 MB
EGAF50000975882 txt 1.2 MB
EGAF50000975885 txt 1.2 MB
EGAF50000975886 fastq.gz 4.5 GB
EGAF50000975887 fastq.gz 6.1 GB
EGAF50000975888 fastq.gz 5.9 GB
EGAF50000975889 fastq.gz 7.9 GB
EGAF50000975890 fastq.gz 9.3 GB
EGAF50000975891 fastq.gz 8.6 GB
EGAF50000975892 fastq.gz 4.1 GB
EGAF50000975893 fastq.gz 13.6 GB
EGAF50000975894 fastq.gz 7.3 GB
EGAF50000975895 fastq.gz 6.0 GB
EGAF50000975896 fastq.gz 5.5 GB
EGAF50000975897 fastq.gz 6.0 GB
EGAF50000975898 fastq.gz 6.9 GB
EGAF50000975899 fastq.gz 4.7 GB
EGAF50000975900 fastq.gz 6.9 GB
EGAF50000975901 fastq.gz 8.1 GB
EGAF50000975902 fastq.gz 5.0 GB
EGAF50000975903 fastq.gz 6.9 GB
EGAF50000975904 fastq.gz 5.7 GB
EGAF50000975905 fastq.gz 5.6 GB
EGAF50000975906 fastq.gz 8.2 GB
EGAF50000975907 fastq.gz 7.0 GB
EGAF50000975908 fastq.gz 6.1 GB
EGAF50000975909 fastq.gz 7.2 GB
EGAF50000975910 fastq.gz 6.1 GB
EGAF50000975911 fastq.gz 11.4 GB
EGAF50000975912 fastq.gz 5.9 GB
EGAF50000975913 fastq.gz 7.5 GB
EGAF50000975914 fastq.gz 5.2 GB
EGAF50000975915 fastq.gz 4.8 GB
EGAF50000975916 fastq.gz 11.3 GB
EGAF50000975917 fastq.gz 5.4 GB
EGAF50000975918 fastq.gz 6.8 GB
EGAF50000975919 fastq.gz 6.0 GB
EGAF50000975920 fastq.gz 5.2 GB
EGAF50000975921 fastq.gz 5.4 GB
EGAF50000975922 fastq.gz 7.3 GB
EGAF50000975923 fastq.gz 10.6 GB
EGAF50000975924 fastq.gz 10.4 GB
EGAF50000975925 fastq.gz 4.2 GB
EGAF50000975926 fastq.gz 9.8 GB
EGAF50000975927 fastq.gz 7.7 GB
EGAF50000975928 fastq.gz 5.0 GB
EGAF50000975929 fastq.gz 5.0 GB
EGAF50000975930 fastq.gz 6.7 GB
EGAF50000975931 fastq.gz 5.4 GB
EGAF50000975932 fastq.gz 7.3 GB
EGAF50000975933 fastq.gz 6.1 GB
EGAF50000975934 fastq.gz 8.4 GB
EGAF50000975935 fastq.gz 9.2 GB
EGAF50000975936 fastq.gz 5.9 GB
EGAF50000975937 fastq.gz 6.0 GB
EGAF50000975938 fastq.gz 5.1 GB
EGAF50000975939 fastq.gz 7.2 GB
EGAF50000975940 fastq.gz 12.7 GB
EGAF50000975941 fastq.gz 6.1 GB
EGAF50000975942 fastq.gz 7.4 GB
EGAF50000975943 fastq.gz 7.5 GB
EGAF50000975944 fastq.gz 10.3 GB
EGAF50000975945 fastq.gz 12.8 GB
EGAF50000975946 fastq.gz 7.7 GB
EGAF50000975947 fastq.gz 4.7 GB
EGAF50000975948 fastq.gz 5.5 GB
EGAF50000975949 fastq.gz 7.5 GB
EGAF50000975950 fastq.gz 6.0 GB
EGAF50000975951 fastq.gz 8.5 GB
EGAF50000975952 fastq.gz 6.7 GB
EGAF50000975953 fastq.gz 4.4 GB
EGAF50000975954 fastq.gz 10.0 GB
EGAF50000975955 fastq.gz 7.3 GB
EGAF50000975956 fastq.gz 5.7 GB
EGAF50000975957 fastq.gz 5.1 GB
EGAF50000975958 fastq.gz 5.2 GB
EGAF50000975959 fastq.gz 8.5 GB
EGAF50000975960 fastq.gz 17.1 GB
EGAF50000975961 fastq.gz 5.3 GB
EGAF50000975962 fastq.gz 5.2 GB
EGAF50000975963 fastq.gz 6.9 GB
EGAF50000975964 fastq.gz 6.0 GB
EGAF50000975965 fastq.gz 6.2 GB
EGAF50000975966 fastq.gz 10.0 GB
EGAF50000975967 fastq.gz 5.6 GB
EGAF50000975968 fastq.gz 16.9 GB
EGAF50000975969 fastq.gz 6.0 GB
EGAF50000975970 fastq.gz 5.5 GB
EGAF50000975971 fastq.gz 6.6 GB
EGAF50000975972 fastq.gz 5.7 GB
EGAF50000975973 fastq.gz 5.0 GB
EGAF50000975974 fastq.gz 5.1 GB
EGAF50000975975 fastq.gz 13.7 GB
EGAF50000975976 fastq.gz 7.0 GB
EGAF50000975977 fastq.gz 9.2 GB
EGAF50000975978 fastq.gz 6.2 GB
EGAF50000975979 fastq.gz 8.3 GB
EGAF50000975980 fastq.gz 9.3 GB
EGAF50000975981 fastq.gz 4.3 GB
EGAF50000975982 fastq.gz 5.7 GB
EGAF50000975983 fastq.gz 4.3 GB
EGAF50000975984 fastq.gz 4.8 GB
EGAF50000975985 fastq.gz 5.1 GB
EGAF50000975986 fastq.gz 5.5 GB
EGAF50000975987 fastq.gz 8.2 GB
EGAF50000975988 fastq.gz 6.1 GB
EGAF50000975989 fastq.gz 6.6 GB
EGAF50000975990 fastq.gz 6.0 GB
EGAF50000975991 fastq.gz 5.4 GB
159 Files (750.5 GB)