Dataset for genomic analyses in AUBMC Waterpipe patients
This dataset includes 24 samples (13 tumor- 11 matched pairs) analyzed by targeted next-generation sequencing and 14 samples (7 tumor- 7 normal matched pairs) analyzed by whole-exome sequencing (MSK-IMPACT).
- 14/10/2026
- 24 samples
- DAC: EGAC50000001155
- Technology: Illumina NovaSeq 6000
- Archive: European Genome-phenome Archive (EGA)
DUO:0000006 version: 2021-02-23
health or medical or biomedical research
This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
DUO:0000019 version: 2021-02-23
publication required
This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
DUO:0000021 version: 2021-02-23
ethics approval required
This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
DUO:0000045 version: 2021-02-23
not for profit organisation use only
This data use modifier indicates that use of the data is limited to not-for-profit organizations.
AUBMC Waterpipe Bladder Cancer Cohort - Data Access Policy
Access to the sequencing data deposited under this study is restricted to protect patient confidentiality, in accordance with IRB protocol IM.AS.34/BIO-2017-0464 approved by the Ethics Committees and Institutional Review Boards of the American University of Beirut Medical Center (AUBMC), Beirut, Lebanon, and Memorial Sloan Kettering Cancer Center (MSK), New York, United States. Researchers wishing to access the data must: (1) submit a data access request describing the intended research use; (2) provide evidence of institutional ethics/IRB approval for the proposed research; (3) sign a Data Use Agreement (DUA) with AUBMC; (4) agree not to attempt re-identification of any study participant; (5) agree to acknowledge the data source in any resulting publications. Requests will be reviewed by the AUBMC Waterpipe Bladder Cancer Data Access Committee (EGAC50000001155). Commercial use of these data requires separate written authorization from AUBMC. All data use must comply with applicable data protection regulations.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000002183 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF50001043715 | bam | 2.8 GB |
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| EGAF50001043716 | bam | 5.4 GB |
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| EGAF50001043717 | bam | 8.5 GB |
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| EGAF50001043718 | bam | 2.4 GB |
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| EGAF50001043719 | bam | 4.0 GB |
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| EGAF50001043720 | bam | 3.1 GB |
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| EGAF50001043721 | bam | 2.8 GB |
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| EGAF50001043722 | bam | 6.7 GB |
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| EGAF50001043723 | bam | 2.6 GB |
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| EGAF50001043724 | bam | 5.5 GB |
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| EGAF50001043725 | bam | 2.3 GB |
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| EGAF50001043726 | bam | 3.1 GB |
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| EGAF50001043727 | bam | 2.8 GB |
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| EGAF50001043728 | bam | 5.4 GB |
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| EGAF50001043729 | bam | 5.2 GB |
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| EGAF50001043730 | bam | 2.9 GB |
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| EGAF50001043731 | bam | 3.2 GB |
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| EGAF50001043732 | bam | 5.2 GB |
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| EGAF50001043733 | bam | 2.7 GB |
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| EGAF50001043734 | bam | 3.1 GB |
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| EGAF50001043735 | bam | 2.9 GB |
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| EGAF50001043736 | bam | 4.1 GB |
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| EGAF50001043737 | bam | 4.0 GB |
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| EGAF50001043738 | bam | 8.2 GB |
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| EGAF50001043739 | bam | 39.5 GB |
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| EGAF50001043740 | bam | 16.7 GB |
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| EGAF50001043741 | bam | 57.6 GB |
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| EGAF50001043742 | bam | 18.1 GB |
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| EGAF50001043743 | bam | 15.0 GB |
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| EGAF50001043744 | bam | 40.3 GB |
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| EGAF50001043745 | bam | 16.0 GB |
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| EGAF50001043746 | bam | 22.5 GB |
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| EGAF50001043747 | bam | 16.9 GB |
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| EGAF50001043748 | bam | 39.9 GB |
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| EGAF50001043749 | bam | 16.4 GB |
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| EGAF50001043750 | bam | 45.7 GB |
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| EGAF50001043751 | bam | 19.1 GB |
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| EGAF50001043752 | bam | 40.9 GB |
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| 38 Files (503.4 GB) | ||||
