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Dataset for genomic analyses in AUBMC Waterpipe patients

This dataset includes 24 samples (13 tumor- 11 matched pairs) analyzed by targeted next-generation sequencing and 14 samples (7 tumor- 7 normal matched pairs) analyzed by whole-exome sequencing (MSK-IMPACT).

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000045
version: 2021-02-23

not for profit organisation use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations.

AUBMC Waterpipe Bladder Cancer Cohort - Data Access Policy

Access to the sequencing data deposited under this study is restricted to protect patient confidentiality, in accordance with IRB protocol IM.AS.34/BIO-2017-0464 approved by the Ethics Committees and Institutional Review Boards of the American University of Beirut Medical Center (AUBMC), Beirut, Lebanon, and Memorial Sloan Kettering Cancer Center (MSK), New York, United States. Researchers wishing to access the data must: (1) submit a data access request describing the intended research use; (2) provide evidence of institutional ethics/IRB approval for the proposed research; (3) sign a Data Use Agreement (DUA) with AUBMC; (4) agree not to attempt re-identification of any study participant; (5) agree to acknowledge the data source in any resulting publications. Requests will be reviewed by the AUBMC Waterpipe Bladder Cancer Data Access Committee (EGAC50000001155). Commercial use of these data requires separate written authorization from AUBMC. All data use must comply with applicable data protection regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002183 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50001043715 bam 2.8 GB
EGAF50001043716 bam 5.4 GB
EGAF50001043717 bam 8.5 GB
EGAF50001043718 bam 2.4 GB
EGAF50001043719 bam 4.0 GB
EGAF50001043720 bam 3.1 GB
EGAF50001043721 bam 2.8 GB
EGAF50001043722 bam 6.7 GB
EGAF50001043723 bam 2.6 GB
EGAF50001043724 bam 5.5 GB
EGAF50001043725 bam 2.3 GB
EGAF50001043726 bam 3.1 GB
EGAF50001043727 bam 2.8 GB
EGAF50001043728 bam 5.4 GB
EGAF50001043729 bam 5.2 GB
EGAF50001043730 bam 2.9 GB
EGAF50001043731 bam 3.2 GB
EGAF50001043732 bam 5.2 GB
EGAF50001043733 bam 2.7 GB
EGAF50001043734 bam 3.1 GB
EGAF50001043735 bam 2.9 GB
EGAF50001043736 bam 4.1 GB
EGAF50001043737 bam 4.0 GB
EGAF50001043738 bam 8.2 GB
EGAF50001043739 bam 39.5 GB
EGAF50001043740 bam 16.7 GB
EGAF50001043741 bam 57.6 GB
EGAF50001043742 bam 18.1 GB
EGAF50001043743 bam 15.0 GB
EGAF50001043744 bam 40.3 GB
EGAF50001043745 bam 16.0 GB
EGAF50001043746 bam 22.5 GB
EGAF50001043747 bam 16.9 GB
EGAF50001043748 bam 39.9 GB
EGAF50001043749 bam 16.4 GB
EGAF50001043750 bam 45.7 GB
EGAF50001043751 bam 19.1 GB
EGAF50001043752 bam 40.9 GB
38 Files (503.4 GB)